Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391707
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Entry
139391707 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139391707
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139391707
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139391707
NCBI-ProteinID:
XP_070995284
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Position
32:complement(33607189..33626464)
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AA seq
949 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFHQISSGTPTSTTSSSPIPPSFATYTTENSED
DKKRGRSTDSEVGQLCCTRSGFEVMPFIKFQSPIKNGNPSSSLSSSSSSSSSSSSSASSG
ASSSSLATIAGVGLPVTGGNSLLGNMGGLLSNSGSYRDATQLQQHYHTQQARNSVISSNA
PSNSNPSNNILLPSPSASSPANSSTTLLPLTPNTQLHAPSRPSPSSSLGLGLGLGLGKGG
ITGSPAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKSVSSSS
PNSGTVGPMGGNTVSDRSTGLLGSAPCAIGVSGGILSLSGLGSGQLAVQGPPLVASSPIG
GLSPGSSLGAIGSIGGNSGSGAPSSSVGMGGGSTAITRPPSGQKQNGSTSYSAVVADSTP
DSTLNSASQLQSSQPSSLTSTTNQPKDSGPSLLGPMILPTSSPSPSYSESKLPGSGMLNG
PLSYTQTSESKPQEPLSTLKSMAERAALGSGMEGEMLPLHLTTDIFPSTTLPPGPPSAPQ
QPSLSEVSIPPSLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCP
TLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMM
WFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaacgctaaccag
aaggagaagtatgaagcagacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagattaaagacaaaaggcagctagtggagaat
cgcaaactgattgagacgcaaatggagcggttcaagatcgtggagcgagagaccaagaca
aaggcctactcgaaggaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaagaggaggtcggcaattggctaacgaatacaatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaggacccagacttcgag
gagaacgagttcctctatgacgacctggatctggaggagctccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccatccctccctcgttcgcaacttacactacggagaactctgaagat
gacaagaaaaggggacgttcgacagacagtgaagtcggtcagctgtgctgcaccaggagt
ggttttgaagtaatgccttttataaaatttcagtcgcctatcaagaacggcaacccctct
tcgtcgttgtcctcctcctcctcttcctcctcctcctcttcatcctctgcctcctcggga
gcctcctcatcctcgctggcgaccatcgccggggttggcctgcctgtcactgggggcaac
agcctcctgggcaacatgggaggtctcctatccaactctggcagctacagagacgctacc
caactgcagcagcattaccatacccagcaggccagaaactcagtcatctcctccaacgcc
ccctccaactccaacccttcgaacaacatcctcctccccagcccctccgcttcctcaccc
gccaactctagcacaaccctcctcccactcacgcccaacacccagttgcatgctccatca
aggccgtcaccgtcctccagcttggggcttgggttgggcttgggccttggtaaaggcggc
attacggggtcaccggccgtcagccagatgtctggccttggcttgtcggggatgccggca
tccctaaacaccatggccgggctcctggcgggctcaacttcggccccctacgccacggca
gcagcaggctccggaaccatcggaagccccctagcagggaaaagcgtcagcagtagcagc
cctaactctggcacagtgggaccgatgggcggaaacactgtcagcgatagatccacgggc
ctgttgggctctgcgccctgtgcaattggtgtcagcggtgggattctcagcctaagcggc
cttggctcagggcagttggcggtccagggccctcccctggtggcctccagtcccatagga
ggcctgtcccctggaagcagcctgggagccataggaagcattggagggaactctggttca
ggcgcgccaagcagcagcgtgggcatgggaggaggaagcacggcgatcacaaggccaccc
agtggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagcacaccc
gattccaccctcaatagtgccagccaattacagagcagccaaccgtcgtctttgacctcc
accaccaatcagcctaaagacagtggccccagcctcttagggcccatgattcttcccacc
agctctccctcgccctcctacagcgagagtaaacttccaggcagcggtatgctcaacggg
ccactctcctacacacagacctctgaaagcaagccccaggagcctctgagcactctaaag
tctatggcagaacgagcggcactgggctcaggaatggagggagagatgcttcctctgcac
ctcaccacagacattttccccagcactacattgcccccggggcctccctcggccccccag
cagccctcgctttcagaggtcagcatccccccatcgctgggcgtgtgcccactcggacct
gtgcccctgtccaaagaccagctgtaccagcaggccatgcaggaatcggcatggacgcac
atgccccacccctccgactcggagaggatcaggcagtacctgatgaggaacccatgtccc
accctgcctttccaccaccaggtgccacccccccactccgactctgtagagttctaccag
agactgtccacggagacactgttcttcatcttctactacctagagggcaccaaggcccag
tatctggcagccaaggccttgaagaagcagtcgtggcggttccacaccaagtacatgatg
tggttccagaggcacgaggagcccaagaccatcacagatgagtttgagcaggggacgtac
atttactttgactacgagaagtggggacaacggaagaaggagggattcacgtttgagtac
aggtaccttgaagaccgagacctccagtga
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