Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391739
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Entry
139391739 CDS
T10872
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139391739
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139391739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
New_glue
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
139391739
NCBI-ProteinID:
XP_070995344
LinkDB
All DBs
Position
32:31432254..31531117
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AA seq
1889 aa
AA seq
DB search
MQAIGLKTWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGEFES
YRFIYSTQSDAEETELEMTKKEAKVIINFDPRMLYTVKVTAVKGAQESKPLQGTFKKPDN
ENVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRMEWHLNTFTTKEAVIDAVKNLPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVKPPAQSLREAGIELFAIGVKNADV
KELKAIGSPPEETHVYNVADFSVMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMTSPR
GLVTSEVTARSFRVSWTHAPGTVEKYRVVYYPASGGQPEEKVVQGTVDTVVLNYLLSLTE
YQVAVFAIYASSASEALRGSATTLALPTVNNLELFDITHNTMRARWRVAEGASGFMILYA
PLTEGDDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQETTLPLTP
ARNLRFSNVDHSSARLTWEATSKMASGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNPRSSEVSTESFRVTWEHSAQDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTKATTTTTTTQATTTAVVRLGVRNLLLSDHTTFSMEVSWEQQDRIVRQYRVA
YVTARGDRAEETKMVTGGQNSLLLQPLLSDMEYKVTVTPVYADGDGPGVSRMGRTLPLSA
PRNLRVSEEWYNRFRITWDTSPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMS
GTEYGVRVIASYTTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCTQWGAHRHATLYRVV
IESLLNGYKQEAKLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTP
APTRPPTTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLHSTTGALDII
GPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFT
VGGGIRRGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPS
ERHVFFVDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGH
VSGVSMEPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFAL
WEILNKDNEPLVGVILDNSGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHMAIS
KTSAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSFDIVCSTS
WASRDKCCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAV
GPIGPVGDAGSPGLQGPPGPQGPGGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGPSG
RAGQTGTRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKG
ERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGP
GPQGEQGPPGRPGFPGSNGENGQAGARGLSGEKGDKGSPGAGVQGPRGPVGPPGPTGQGR
TGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLP
LVQLPPNTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPGLTQGDEVLRSP
GIHRSYRSLADKNDKKEEEGPGERKMVVP
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagacgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagaatttgaaagc
tacagatttatttatagcacacagtcagatgcagaggagactgaactagagatgacaaaa
aaggaagccaaagtgatcataaactttgaccccagaatgttgtacacagtcaaggtcact
gctgtgaaaggtgctcaagagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaatgtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcaccgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccattgcagatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggatggagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacctgccctacaaaggagggaacacactgacgggtctt
gcattgacgtacatcctggagaacagttataaacctgagtccggatccagggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcaaacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgccgatgtg
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctataacgtggccgac
ttcagcgtcatgagctctatcgtggagcgtctgaccaggaccgtctgtgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatgacctctcccaga
ggcctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggacggtggagaagtaccgggtggtgtactaccctgccagcgggggccagcccgaggag
aaggtagtgcagggcacagtggacacagtggtgctcaactacctcctctccctgactgag
taccaggtggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagc
gctaccacattggccctgcccacggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggcttcatgatcctctatgcc
ccgctgaccgagggagacgacgccgatgagaaggaggtgaaagtggctgagacggtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgacggtgtacgccatg
tatggagaggaggccagtgaccctatgaccagtcaggagaccacgctacccctgaccccg
gcgcggaacctgcgcttctccaacgtcgaccacagctctgccagactcacctgggaggcg
acgtccaagatggccagcggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgtatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcactactaagacggtcccagagcctctgaacccgaggagcagtgaagtctccaca
gaaagcttcagggtcacctgggaacactcagcccaagatgtggttctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccattactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgccgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctacaactaccacaaaagctacaactaccacaactaccacacaagct
accaccacagcagttgtgcgtctgggtgtgaggaacctcctgctcagcgatcacaccacc
ttcagcatggaggtgtcctgggagcagcaggaccgcatcgtgcgtcagtaccgcgtcgcc
tatgtcaccgccaggggcgatcgtgccgaggagacgaaaatggtcacaggtggtcagaac
agcctcctgctgcagccactgctgtctgacatggagtacaaggtgacggtcaccccggtc
tacgccgacggagacggccccggtgttagccgcatgggacgcaccttgccactgtctgct
cctaggaacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacacg
tccccatcccccactatgggctatagagtcgtctacaaacccatctctgctccgggacct
gctttggagacctttgtgggcgaggacgtgaacaccatgctgatcctgaacctgatgagc
ggtactgagtacggcgtcagggtcatcgcctcctacactaccggctccagcgagaccctc
accggcaaggccaggacattgtaccttggagtgaccaatctgaacacctaccaggtgagg
atgaccagcgtgtgtacccagtggggtgcccaccgccacgccactctgtaccgtgtggtc
atcgagtcgctgctcaatggatataagcaggaggcaaaactgggaggaggaaccacccgg
cactgcttcaatgacctgacagctaacacgcagtacaagatcagtgtgtacgcccaactc
caggatacagagggacctgcagtctccaccacagagaagaccttccctgttcccaccccg
gcacccaccagaccacccaccacgaccgctcctcccagtataccctcagtcaaggaagtt
tgcaaggcggccaaggcagacctggcatttctagtggacggctcctggagcatcggtgat
gacaacttcctgaaaatcatccgcttcctgcacagcacaacaggagccctcgacatcatt
ggaccagatggtactcaggtggccattgtccagttcagtgacgatgccagaaccgagttc
aaacttaactcgtacgacaataaggagaggctgctagaggccattaaccgcatctcctat
aagggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcaca
gtgggaggaggtatccggaggggcattcccaaagtactggtggtgttgactgacgggcgc
tctcaggacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgttttt
gccattggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcctagc
gagagacacgttttctttgtggatgatttagacgccttcaagaaaattgaggaaaagctg
gtcacttttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagt
accttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacat
gtatcaggagtgtccatggagcctggcaccttcaacagcttcccctgcttccgcctgcac
aacaactccctccttgcccagcccactaagtttatccaccccgagggtttgccctctgat
tacaccatcactatgctgttccgcctgctgcctgaaacgcccaaggagccctttgcattg
tgggagatcctcaacaaggacaacgagcccttggtgggcgtcatcctggacaacagtggc
aagaccctcaccttcttcaaccatgactacaaaggacagtttcagactgtgaccttcgag
ggacctgagatcaagaagctcttctacggcagtttccacaagctgcacatggctattagc
aagaccagcgccaaggctgtcattgactgtaagctagtaggggagaaggccatcaacgcg
gcgggcaacatcaccacggatggcctggaggtgctgggacgcatggtgcgctccaggggg
aagaaggacagctctgctccgttccaactgcagtcgtttgacatcgtctgcagcacgtcc
tgggccagccgagacaagtgctgtgagcttcctggtttgaggaaggaggaggactgtcct
gccatgccgagggcctgcacctgcagccaggaaagcaaaggtccccctggccccactgga
ccccctggaggacctgggatcagaggagggagaggggaccgtggagaaccaggagctgtg
ggaccgataggtccagttggggacgctggttctcctgggctgcaggggcctcctggaccc
caggggcccggcggacgtaccatcatgggccctccgggtggtccaggagaaagaggtgag
aagggtgcagctggcgctccaggaatacagggcattcctggatctcctgggccatcaggt
cgagcgggacaaacaggaacaaggggacttcctggtaaagatggaccccaggggcgaaca
ggacctccggggactataggcactccaggagctcctgggtcaccagggtcaagtggacct
ccagggtcactgggaaaccagggacctcctggtcccgccggaaacaaaggagagaaggga
gaaagaggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgag
caactgatacagagtcacatggctcgctacagctccatccttaaccacatcccgagcgca
cccgtctccgtccgcaccgttccaggtcccccaggagagcccgggcggcagggcggccca
ggaccacagggagagcaggggcccccgggcagaccagggttccccgggtccaatggagaa
aatggacaagcaggagcaagaggtttgtcaggagagaagggtgacaagggaagcccaggc
gcaggagtccagggtcccagaggccctgtcgggcccccaggaccaacgggtcagggccgg
acaggaagccagggtccatctggtcggccagggaaccctggaacccctgggcggccgggt
atccctggaccagtggggtcggctggacctcctggatactgtgaccagaactcctgtgtg
ggctacaacgtaggagagggtggcatcggtggtgacacatctgaccgccacaatcttccc
ttagtccaattgccccccaacacctaccagaactatgacgaggtggaggaggaggacccc
tataggtatggcgaggggggctacccctccgagtactatcagcccaactacccggcgcct
cgaccggtcgtgcccgaggacccaggcctcacccagggtgacgaggtgctgaggtccccc
gggatccaccgctcctacaggagcctggctgacaagaatgataagaaagaagaagagggg
ccgggggagaggaagatggttgtcccatga
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