KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391852
Entry
139391852         CDS       T10872                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082  ATP-dependent chromatin remodeling
ocla03083  Polycomb repressive complex
ocla04110  Cell cycle
ocla04330  Notch signaling pathway
ocla04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    139391852
   03083 Polycomb repressive complex
    139391852
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    139391852
   04350 TGF-beta signaling pathway
    139391852
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    139391852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ocla03036]
    139391852
Enzymes [BR:ocla01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     139391852
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     139391852
   HDAC complexes
    Sin3A-HDAC complex
     139391852
    BRAF-HDAC complex
     139391852
    REST complex
     139391852
    SHIP complex
     139391852
    MiDAC complex
     139391852
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     139391852
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    139391852
  Chromatin remodeling factors
   NuRD complex
    139391852
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 139391852
NCBI-ProteinID: XP_070995548
LinkDB
Position
32:complement(6886684..6902999)
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRTIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEEDESPDKRISIWAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEKEAEEKKDVKEEKETEEKMDTTGPTE
ETKTS
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctattattatgatggcgac
gttggtaattattactatggccagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctcctgctcaactatggactgtacaggaagatggagatatatagaccccacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacataaagttcctgcgtacc
atccggccagacaacatgtcagagcacagcaaacagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctctgggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggggtggaagaggctttcttcaccacagaccgggtcatgacggtgtccttc
cacaagtatggagaatacttccctggtaccggagacctgagggacattggagcagggaag
gggaagtactatgctgtaaactaccctctcagagacggcatcgacgatgagtcttacgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccaacccagtgcagtcgtg
ttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctcaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgttgatgttg
ggaggtggaggttataccatccgtaacgtggcccgctgctggacctacgagaccgctgtg
gcgctggacagcattataccgaacgagctgccttacaacgactactttgagtactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgcatgctgccccacgccccgggg
gttcagatgcaggccatcccagaagacgctccacacccggactctggagatgaggaggac
gagagccctgacaaacgcatctccatctgggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cacaagaagaccaaacgagtcaagactgaggaggagaaagagaaggaggcagaggagaag
aaagatgtgaaagaggagaaagagacagaggagaagatggacacaacagggccaacagaa
gaaacgaagacatcctga

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