Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391986
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Entry
139391986 CDS
T10872
Name
(RefSeq) splicing factor, proline- and glutamine-rich-like
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139391986
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139391986
03041 Spliceosome [BR:
ocla03041
]
139391986
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139391986
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139391986
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
139391986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_7
Motif
Other DBs
NCBI-GeneID:
139391986
NCBI-ProteinID:
XP_070995700
LinkDB
All DBs
Position
32:complement(34232888..34256440)
Genome browser
AA seq
665 aa
AA seq
DB search
MSRDRFNINVRGNNRGAGFQRRGAGPGGPMRGGMGNLNNFRQNQHPFQRGPHPGNFGKPP
NQIRPMTPQKPMPPTNSQPGAQPIRPPPTPGPALTMKGPVQQQQAAAAAAPPATVAAPPA
PTATTPATAAPAAAPPAVATAPPKAATAPPKAAAAPPKAAATPPAAAAAAPIGQPKMQSP
PPKPVPPKPAISSPPPNQMKKPALSSPPPNQMNRNQQRPGNANGNGHKSAPFIKKPEPQT
QNTQMEAEEAQHPKELRATLSSLRRPGEKTYTQRCRLFIGNLPNDISDDTFKKLFAKYGE
PSEIFINKNKGFGFIRLESRALAEIAKAELDDVPMKGRPLRVRFATHSAALSVKNLSPFV
SNELLEEAFSQFGVVERAVVIVDDRGRSTGKGIVEFASKPAARKALDRCNDGVFLLTTSP
RPIVVEPLEQYDDEDGLPEKLAQKNHNYHKEREEPPRFARPGTFEFEYSKRWKSLDDMEK
QQRQQVEKNIREAREKLEGEMDDAFHVHQANMIRQDLLRREEELRRMEEMHSAEMQKRKE
MQLRQEEERRIREEEMLRQREIEEQMRRKREEAYRSGNFMDNRDMRMTQGGTMGMADNQF
GSPNQKFPMGHQGMGGPSTGGAMMPNEMRNERNFPQGGRGGLGPNNQGFGRVREEFDGPA
KKPRF
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgggacagatttaacattaacgttagaggaaataaccgtggagctggatttcaa
cgccggggagctgggcctggtggtccgatgcgaggtggaatgggtaacctgaataatttc
agacaaaaccaacacccctttcaacgagggcctcatcccggtaactttggaaaaccaccc
aaccagatacgtccgatgacccctcagaagcctatgccacctactaattcccagccaggc
gctcaaccgattcggccaccacctactcctggccctgcgctaaccatgaagggccccgta
cagcaacagcaggccgcggccgcagcagcacctccggcgaccgtagcagcacctccggcg
cctacagcaacaactccagcgactgcagcaccggcggccgcacctccggctgttgcaaca
gcacctccgaaagccgcaacagcacctccgaaagccgcagcagcacccccgaaagccgca
gctacacctccagcagccgcagcagcagcgccgataggtcaaccaaaaatgcagtcccca
cctccgaagcctgttcctccgaaacccgcaatctcatctcccccaccaaaccaaatgaag
aaaccagcactttcatctcccccaccaaaccaaatgaataggaaccagcaaagaccaggc
aacgccaatggaaatgggcataaatctgcaccctttatcaaaaaacctgaacctcaaact
cagaatactcaaatggaggccgaggaagcccagcaccccaaggagttgagagcgacgttg
tcatcgctgcgcagacctggcgagaagacatacactcaacgatgccgccttttcattggc
aaccttcccaatgatatctcagatgacacgttcaagaagctgtttgcgaagtatggcgag
cccagtgagattttcatcaacaaaaacaaaggctttggcttcatacgcctggaatcccgt
gcattggctgagatagctaaagctgaactggatgatgtgcccatgaaaggcagacctctt
cgggtgcgcttcgcaactcactctgctgcactgtctgtgaagaacttgtcacctttcgtc
tccaatgagctactggaggaggccttctcccagtttggagtggtagagagagctgtggta
attgtagatgatcgcgggcgttccactggcaagggcattgttgaatttgcctctaagcct
gctgcacgaaaggctctggatcgttgcaacgatggcgtcttcttgctcaccacgtcacct
cgtccaattgtcgttgagcctcttgaacaatatgatgatgaggatggtctaccagagaaa
ctggcacagaagaaccacaactatcataaggagcgggaggaaccgcccaggtttgcccgt
cctggcacatttgagtttgaatactctaagcgctggaagtccctggatgacatggagaag
cagcagcggcagcaggtggagaagaacattcgcgaagcccgcgagaaactggagggagag
atggacgatgcgttccatgtgcaccaggccaacatgatccgccaagatctgctgaggcgg
gaggaggaactacggcgcatggaagagatgcacagtgcagagatgcagaagaggaaagag
atgcagctcaggcaggaggaggagcgtcgcatacgcgaggaagagatgcttcgccagagg
gagattgaggagcaaatgcgccgcaagcgtgaggaggcctacaggagtggcaacttcatg
gacaatagggatatgagaatgactcagggtggcaccatgggcatggctgacaatcaattt
ggctcacccaaccagaagttccccatgggacaccaaggcatggggggacccagcactggg
ggagccatgatgcccaacgaaatgcgaaatgagcgaaacttccctcagggaggccggggg
ggactgggtcctaacaaccaagggtttggcagggtccgtgaggagtttgatgggcctgcc
aagaagccccgcttttaa
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