Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392029
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Entry
139392029 CDS
T10872
Name
(RefSeq) collagen alpha-1(XXII) chain-like isoform X1
KO
K16630
collagen type XXII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
139392029
NCBI-ProteinID:
XP_070995775
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All DBs
Position
32:26161078..26231755
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AA seq
1624 aa
AA seq
DB search
MELRLGCRASLVLVILVLTLSGLRVDAQSRAGCKNVHYDLVFILDTSSSVGKENFEKIRQ
WVSNLVESFDVGPDKTRVAVVRYSDRPTTEFNLGRYSTMDEVKRAARNIRYLGGNTMTGD
AISYTTTNIFTERAGARPAARGIQKVAILLTDGRSQDYVLEPSKAAAKAGVRMFAVGIGE
ALKVELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSTS
YGLEEVPGFDLMEYFKVENILGPKFDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVT
TFKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNEEVD
NLFDRNWHKIALSVEAKAVSLYLDCKLIQTLPIGDREDIDIHGKTVIGKRLYDSVPIDFD
LQRMIIYCDSKHAELETCCDLPTGPCPKKVVTEVPPIEIPTPTPAREEQQRGPQAVNCSC
PAGERGEIGVPGVAGPKGEKGDTGALGAAGPSGLKGAKGETGKVISVKGDRGEKGDPGRR
GTSGDEGSKGEKGTSGAAGLAGKDGSKGERGESGLAGDQGLPGPLGPKGIEGDSGLPGSS
GPKGVGGEKGLKGDKGSGGLRGAKGIDGFPGKPGVPGKDGLGGLTGAPGAAGVKGEKGEM
GPAGMPGDMVQSEGLKGVDGPPGPRGPPGPDGPPGPPGAPGQLGLPGEPGEFGQRGKKGE
SGLPGVDGLPGPPGPQGPPGGQGNPGQTGPPGLPGEIGFSGKLGEPGKAGLPGNDGLDGV
PGNDGDKGPRGESGLDGFPGKPGPKGEEGTPGPRGPGGESGPVGLTGQPGVVGPRGEKGG
QGDRGQDGSFGPKGDKGDKGDTGPKGTPGIPGNVANVIPEPGEPGNPGARGEKGEQGNPG
EIGQRGLPGEPGFKGLAGPQGPKGDIGPKGETGRQGDPGPPGLQGTQGTRGLPGNVGIPG
TLGPPGIAGQRGERGDLGKEGRAGPPGPPGDAGIQGPPGLPGKGKDGQNGDPGQRGIEGP
PGQKGQPGSQGLQGVPGDRGPPGEGKVGPPGPSGPNGAVGSPGMRGLPGVAGTQGPAGHH
GLPGRPGEKGSPGEPGAAADLSDLNLKDVCSDCPAGPPGQPGLPGTPGDKGPAGPPGKNG
QDGYQGQAGPTGPTGPPGANGEKGVKGDGGPQGGPGDKGETGHTGPPGHPGAAGIMGNPG
NDGQPGPIGPPGAPGEKGKEGMKGIQGPPGLPGLMGQMGKIGKDGRPGEQGEPGKQGETG
PPGQPGLRGMPGFKGHRGEPGQPGSKGEDGKEGRNGPEGKPGQDGNTGPPGPEGLAGRRG
ENGKPGEPGPSGKPGAPGTPGQAGAKGDPGNPGLPGFSGPKGPSGPAGPVGPEGKQGMSG
RAGERGVKGERGDSGGKGDKGPVGDPGMPGNQGLPGRKGHTGMMGMSGPPGEVGLTGPQG
TPGNHGQPGPRGESPSLETMRRLIQEELAKALDAKMAYLMAQIQPSHVKSTAGRPGPPGP
SGKEGSDGRPGPPGEPGMPGQNGGDGMRGPMGPKGERGSRGDKGENGVGQRGETGPSGPI
GPAGMPGYGKDGQPGASGAQGEPGNPGPHGQAGPSGPPGQCDPSQCAYYASLGARPHTKN
VKGH
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgactgggatgcagggcttccctggtcctggtcatactggtcctgacactc
tcaggactgagggttgatgctcagagcagggcaggctgtaagaacgtgcactatgacttg
gtgttcatcctggacacgtcgtccagtgtggggaaggagaactttgagaagatccgccag
tgggtctccaacctggtggagtcgttcgacgtgggcccggacaagacgcgtgtggccgtg
gtacgctacagcgaccggcccaccacagagttcaacctgggacggtacagcaccatggac
gaggtgaagagggccgccaggaacatccgctacctgggagggaacaccatgaccggggac
gccataagctacaccaccaccaacatcttcacagagcgggccggggccaggcctgccgcc
aggggcatccagaaggtggctatcctcctgacggacgggaggagccaggattacgtgttg
gagccttccaaggcggcggcgaaggccggggtgaggatgttcgcagtgggcatcggggag
gctctgaaggtggaacttgaagagatcgctgcggaacctaagaacgctcacgtgttccat
gtgacagactttaacgccatcgacaagatcagagggcggctgaggagacggctctgtgag
aacgtgctgtgccccaatatgaaggtccaaccagaccgcttcaaacccaacagtaccagt
tatggattggaggaagttccagggttcgacctgatggaatacttcaaagtggaaaacata
ctgggaccaaagtttgatgagggccagagctcctacgttcgactagggaccatgcctatt
gtacaacagacagaagatgtgttccctcaaggtctgccagatgaatatgcttttgtgacg
actttcaagttcaggaagacctcgagacgagaggactggtacctctggcagatctttgac
aagtatggaattccacaggtgtctatccgtctggacggtgagaacaaggcagtggaatac
aatgcagtggggctgaccaaagatgcagtgagagctgtgttcaagaacgaagaggtggac
aacctgttcgacaggaactggcacaagatcgccctgagcgtcgaggccaaggctgtgtct
ctctacctggactgtaaactcattcagaccctgcccatcggggacagggaggacattgat
atccacgggaagactgtgatcgggaagaggctgtacgacagcgtgcccattgattttgac
cttcagagaatgatcatctactgtgactccaaacacgctgagctggagacctgctgtgat
ctgcccaccgggccgtgccccaagaaggtggtgacggaggtccctcccatagagattccc
acccccacccctgcaagggaagagcagcagagaggaccccaggcggtcaactgctcatgt
cccgctggagagaggggagagatcggtgtacctggcgttgccgggcccaagggtgaaaag
ggtgatactggtgctctgggagcggctggaccttctggcctcaagggagccaaaggagaa
actggcaaagtaatatctgtcaagggagacagaggtgagaagggtgatcccgggagacgg
gggacatccggcgatgaaggatccaaaggggagaagggaaccagtggagcggcaggtctt
gctgggaaagatggatctaaaggagaaagaggtgaatctgggctggcaggcgatcaggga
ttacctggacctctgggaccaaagggaattgaaggagactcgggacttcctggttcatct
ggacccaaaggtgtcggtggtgaaaaaggtttgaaaggagataaaggatcaggaggatta
cggggtgccaaaggtattgacggattccctggaaaacctggtgttcctggaaaagatggt
ttgggaggactgactggtgcacctggagccgctggagtgaaaggggaaaagggagagatg
ggccctgctggaatgcctggggatatggttcaaagcgagggcttgaaaggagtggatgga
cctccaggacctcgtggccctccagggcctgacggccccccaggaccccctggagcacct
ggtcaacttggtttacctggcgaacctggagagtttggccaaaggggcaagaaaggtgaa
agtggattacctggtgtcgatgggctacccggacctcctggtccccaggggcctcctgga
gggcaaggaaaccctggacaaactggacctcctggtctacctggtgagattggattttca
gggaaactaggagagcctggcaaagctggtttacctggaaacgatgggctggacggagtt
ccaggaaatgacggagacaaggggcctagaggagagtctggattggatggcttccctggt
aaacctggtcctaagggtgaagaaggaacacctgggccaagaggacctggaggagagagt
ggaccagttggtttaactggacaaccaggggtcgttggaccaagaggggagaaaggagga
cagggtgacaggggacaagatggctctttcgggccaaagggtgacaaaggtgacaagggt
gacacaggacccaagggaactccaggaataccaggaaatgtggccaatgttatccctgag
cctggtgagcctggaaatcccggagcgagaggagaaaagggagagcaggggaatccagga
gagattggtcaacgaggactgcctggtgaaccaggctttaaaggactggctggaccacag
ggccctaaaggagacatcggccctaaaggagagactgggagacaaggagaccctggtcct
ccaggattgcagggtacgcagggcacccgtggattgcctggcaatgtgggcatccctgga
acccttggaccacctggaatagctggacagagaggagagaggggagatttggggaaggag
ggtcgtgctggccccccaggtccccctggagatgcaggcatacaaggaccccctggcctg
ccagggaagggcaaagacggacagaacggtgaccctgggcagcggggaattgaaggacct
cccggacagaagggccaacccggatcccagggacttcagggggttccaggggacaggggt
ccaccaggagaaggcaaagtcggacccccgggaccttcagggcccaatggtgcagttgga
tcaccgggcatgagaggtctgccaggcgtcgcaggtacacagggacctgcaggacaccat
ggtttaccaggacgaccaggagagaagggatccccaggagagccaggagcagcagcagac
ttgtcagatttgaatctgaaggacgtgtgttcagactgcccggccggacccccgggacag
cctggtctcccagggacaccaggagacaagggacctgccggacctcctgggaagaacgga
caggacgggtaccaaggccaagcaggcccgaccggacccactggaccccctggtgccaac
ggagagaagggtgtgaaaggtgatggaggaccccaaggaggacctggagacaaaggtgaa
acgggtcacaccggaccccctggccaccccggtgctgctggcatcatggggaatcctggt
aacgacggtcaacccggccccatcggtcccccaggagcccctggagaaaaaggaaaggag
gggatgaagggaatccaggggccaccaggtctaccaggcttaatgggtcaaatgggtaaa
attggcaaagatggccgaccaggagaacaaggagaacctggtaaacaaggagagacagga
ccaccaggacaaccaggtctcaggggaatgcctggcttcaagggtcacagaggagagcct
ggacaaccaggttcaaagggtgaagatggaaaggaaggacgtaacggaccggagggtaaa
cctggccaagacggtaatactggacctcctgggccagaaggcctggctggccggagaggg
gagaatggtaaacctggtgaaccaggaccttcaggaaagccaggagcccctggtactcca
ggtcaggctggagccaagggagaccctgggaacccaggattaccaggctttagtggtccc
aaggggccgtcgggtcctgctggtccggtcggcccagaggggaaacagggtatgtctggc
agagcaggagaacgtggagtcaaaggagagaggggcgactcaggtgggaagggagataag
ggacctgttggagatccaggtatgcctggtaaccaggggctcccaggtcgtaagggccac
acagggatgatgggtatgtccgggcccccaggagaggtgggtcttacagggcctcaggga
acacctggaaaccacggacaaccaggaccacggggagagtcaccatcactggaaacaatg
agaaggctgatccaggaggaactagcgaaagcgctagatgccaaaatggcgtacctgatg
gcccagatccagccgtcccatgtgaagagcacggcaggtcggccaggacctccaggcccc
tcggggaaagaagggagcgacggtcgccccggaccaccaggggagcctggcatgcctggg
cagaacggaggagacggcatgaggggacccatgggtcctaaaggtgagagaggatccaga
ggagacaagggagaaaacggagttggacagagaggagagactggaccatcaggtcctata
ggaccagcaggtatgccaggctatggtaaggacgggcagcccggggcgtctggagctcag
ggagaaccagggaaccctggtccccatggccaggcaggccccagtggacccccagggcag
tgtgacccctctcagtgtgcctactatgccagcctgggagcacgaccccacaccaagaac
gtcaaggggcattaa
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