Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392163
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Entry
139392163 CDS
T10872
Name
(RefSeq) POU domain, class 2, transcription factor 2-like
KO
K09364
POU domain transcription factor, class 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139392163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139392163
03021 Transcription machinery [BR:
ocla03021
]
139392163
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139392163
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
139392163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
HTH_31
Motif
Other DBs
NCBI-GeneID:
139392163
NCBI-ProteinID:
XP_070996036
LinkDB
All DBs
Position
32:32504148..32550109
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AA seq
685 aa
AA seq
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MFVPLPVPFVFQRTASDFSAWRLKSPLALRSSSDIRMSKPAEDEKPGTDFPGESTDSERN
SPDANDQVQPMKTSPFSLSPSLSNTKSKSEAGPEMTSTHVPPPSQQQTPHPHTQLMLAGS
QLAGLAALLPAQQQLLLQQAQAQLLAAAVQQSNAAHAAHAAHAAAQANQQQQQQQQQQQL
TKQEHAQPQLTLSQPIQLTAQDIQQLLQLQQLVLMPGHHLQSPQFLLPQAQGQQGQQGLL
STPNLISLPQHQQSQGSLLTTPPRLGLQAQRRHGDGLTSLQRDKSGDGGVTSGASAAPMT
SVTSGPHGEEPSDLEELEQFARTFKQRRIKLGFTQGDVGMAMGKLYGNDFSQTTISRFEA
LNLSFKNMCKLKPLLEKWLNDAETMAIDNMLPSPSSLSSPMMGFEGMTGRRRKKRTSIET
NVRVALERNFISNQKPNSEEILLMGKQLNMEKEVIRVWFCNRRQKEKRINPCSATPPLPS
QSSLVTHKPPCYNPHMMSSQGLQQAATSLSTTVTSPSPSATCPLTPSGSATMSSAPSSVT
PPPHSTASNAPPTLSAHSLNAGNTMMGVSTGMNQALISSNPLATMQALAASGGQLPISSL
EAGGQMILGGAGVRPSLFLNRHTLLPMASHQACVGLVGGPRGDSPPPRASGMDVDSCSSS
PCSSPASFCSFSEASPPPLGGAMAE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcccttgccggtgccgttcgtctttcagagaactgcttccgacttcagcgcc
tggcgtctcaagtccccgctggctctacgctccagctccgatatcaggatgtcaaaacca
gcagaggatgagaagcctgggacagactttccaggggagagcacagactccgagaggaac
agtcccgatgcaaatgatcaggttcagccaatgaaaacgagtcccttcagtctttctcct
tccttgagcaacaccaagagtaaaagtgaggctggccctgagatgacctccacccatgtg
ccgcctccctcccagcagcagacacctcaccctcacacacaactcatgttggcagggagt
cagctggcagggctggctgccctcttgcctgcgcagcagcagctgttgcttcagcaggcc
caggctcaactcctggccgctgccgtgcagcagtccaacgcggctcacgctgctcatgcc
gcccacgcagcagcccaagccaatcagcagcagcagcaacaacagcagcagcagcagctg
accaaacaagagcatgcccagcctcagctcacgctctctcagcctatccagctcaccgcc
caggatatccagcaactgttgcagctgcagcagttagtcctgatgcccggccatcacctg
cagtctcctcagttcctcctgcctcaggcccagggacaacaggggcagcagggtttactc
tcgacaccaaatttaatttcgctacctcagcatcagcaaagccaggggagtcttctaact
acgccacccaggctgggactgcaagcacagcgtcgtcatggtgatggcctcacgtcgtta
cagagggacaagagcggggacggcggcgtgacctccggggcctcggccgcccccatgacc
tcggtgacctctggcccgcacggtgaggagccaagtgacctggaggagctggagcagttc
gcccgcaccttcaaacagagacgcatcaaactgggcttcacacagggtgacgttggcatg
gcaatggggaaactgtatgggaatgacttcagccagaccaccatctctcgcttcgaagcc
ctcaacctgagctttaagaacatgtgcaagctcaagcctctgcttgagaagtggctaaac
gatgcagagaccatggcgatagacaacatgcttcccagccccagctctctctcctccccc
atgatggggtttgagggcatgacggggcgccgcaggaagaaacgcaccagcattgagacc
aacgtccgcgtggccttagagcgcaacttcatctcgaaccagaagcctaactcagaggag
atcctcctgatgggaaagcagctcaacatggagaaggaggtgatccgggtctggttctgc
aaccggcgccagaaagagaaacgcatcaacccctgcagtgccacccctcccctgcccagc
cagtcctcccttgtgacgcacaaacccccctgctacaacccacacatgatgtctagtcag
gggctgcaacaggctgccaccagcctcagcacaaccgtgaccagcccatcgccctcggca
acctgccctctgacccccagtggctctgcaactatgagctccgccccctcctctgtgact
ccgcctccacacagcacagccagcaacgcccctcccaccctcagtgcccacagcctgaac
gctgggaacacaatgatgggagtaagcacagggatgaaccaggctctcatcagcagcaat
cccctggccacaatgcaagctctggctgccagtggtgggcagctgcccatttccagtctt
gaggccggaggtcagatgatcctgggcggggctggggttcgcccctccctattcctcaac
cgccacaccctcctgcctatggcgtcccaccaagcctgtgtgggattggtcggcggtccc
aggggcgactctccgcccccccgcgccagcggcatggacgtcgactcctgctcctcctct
ccctgctccagccctgcctccttctgctcgttcagcgaagcctcaccgccgccgcttggc
ggggccatggccgagtga
DBGET
integrated database retrieval system
