Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392271
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Entry
139392271 CDS
T10872
Name
(RefSeq) putative uncharacterized protein DDB_G0271982
KO
K16337
syndecan 3
Organism
ocla
Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139392271
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139392271
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139392271
Proteoglycans [BR:
ocla00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
139392271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Fyv8
SDH8
Motif
Other DBs
NCBI-GeneID:
139392271
NCBI-ProteinID:
XP_070996239
LinkDB
All DBs
Position
32:complement(9084058..9138797)
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AA seq
579 aa
AA seq
DB search
MKLPPCFVALIAALLVHSALGQTWVPSDEESSSRDEFYDDEDLFSGSGSGFPQMKVNPIA
VGVSFTTEAPLPFSTTQATGPAPSAPPVAEPSPKVDVLPTPLPTEGEGERVLPTPLPTEG
EGERVLPTPLPTEGEGERVLPTPLPTEGEGQSGVEWEREQEREREQEKEREQEREREQEK
EREQEKEREQEKEREQERDREQEKEREQEKEREQEKEREQEKEREQEKEREQEREREQEK
EREREKEREREKERAQEKEREREKEREQEKEREKEREREREREREREREREREKERERER
ERERERERERERVRERERERIREREKARAAQTTISPRGPAALPMATTSLATPPAESAPPS
SGVEDLGTTEEEDEDVYLSPDPTTSLLMETTTVEEEQEVTTTETETTPIPETTAPPTTTG
PAPAERSSSAPFRPRVPVTLPTKAAPTEKSTRPQPPSTTNNELGVNGPSGDFEIREEDRR
QGNEVGRGVETGAEPDLIGNTINTGSSAAQLPQKNILERKEVLIAVIVGGVVGALFAAFL
VMLLVYRMKKKDEGSYTLEEPKQTTVTYQNPDKQEEFYA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccttgtttcgtggcgctcatcgcggcgctgctcgttcactccgcgctg
ggtcagacctgggttccatcagatgaagaaagttcttccagagatgagttctatgacgat
gaagacctcttctcaggctctggatccggctttccacagatgaaggtcaaccctatagcg
gtgggcgtatctttcaccacggaagcacccctccccttctctaccacccaggccactggc
cccgccccttcggccccacctgtagccgagcccagccctaaagttgacgtccttcccacc
ccactacccactgagggagagggggagagagtccttcctaccccactacccactgaggga
gagggggagagagtccttcctaccccactacccactgagggagagggggagagagtcctt
cctaccccactacccactgagggagaagggcagagcggggtagagtgggagagagaacaa
gagagggagagggaacaagaaaaggagagggaacaagagagggagagggaacaagagaag
gagagggaacaagagaaggagagggaacaagagaaggagagagaacaagagagagatagg
gaacaagagaaggaaagagaacaagagaaggagagggaacaagagaaggagagggaacaa
gagaaggagcgggaacaagaaaaggagagggaacaagagagggagagggaacaagagaag
gagagggaacgagagaaggagagggaacgagagaaggagagggcacaagagaaggagagg
gaacgagagaaggagagggaacaagagaaggagagagaaaaagagagggagagggaacga
gagagggagagggaacgagagagggagagggaacgagagaaggagagagaacgagagagg
gagagggaacgagagagggagagagaacgagagagggtgagagaacgagaaagagagagg
atacgggaaagagagaaggcgagagccgcccagactaccatttccccccgcggccctgca
gctcttcccatggcaaccaccagtttggcgactcctccggcggagagtgcaccgccctct
agcggcgtggaggacctgggcaccacagaagaagaggacgaggatgtttacctgtcccca
gaccccaccaccagtttacttatggagaccaccacagtagaagaagaacaagaagtgacc
actactgagacagagaccacacccatcccagagacaacagctccacccactacgactggc
ccagccccagctgagaggtctagctccgcccccttcaggcccagggttcctgtgaccttg
cctactaaagctgcacccacagagaagagcacacgtccccagccaccctctacgacgaat
aatgagttgggggttaacggacccagcggagactttgagatccgtgaggaggaccgtcgt
cagggaaacgaggttgggcgtggcgtggagacgggagcggagcctgatctgattggcaac
acgatcaacacgggaagttctgccgctcaacttcctcagaagaacatcctggagaggaag
gaggtcctgatagcggtgatagtggggggcgtagtgggggctctgtttgcagcgttcctg
gtcatgctgctggtgtacaggatgaagaagaaagatgaaggcagctacacgctggaggaa
cccaaacagaccaccgtcacctaccagaaccctgacaaacaggaggagttctacgcatga
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