Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392273
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Entry
139392273 CDS
T10872
Name
(RefSeq) GA-binding protein subunit beta-1-like isoform X1
KO
K09454
GA-binding protein transcription factor, beta
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139392273
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139392273
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Ankyrin only
139392273
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Ubiquitas transcription factors
139392273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Ank_KRIT1
ANK_LRRK2
GrpE
Herpes_UL36
TFIIA
EBNA2_Core
Motif
Other DBs
NCBI-GeneID:
139392273
NCBI-ProteinID:
XP_070996244
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Position
3:27883680..27889071
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AA seq
478 aa
AA seq
DB search
MSLVDLGKRLLEAARAGLDDDVRTLMVNGAPFTTDWLGTSPLHLAAQYGHHSTAEVLLRA
GVSRDARTKVDRTPLHMAATEGHSNIVELLVSSGADINAKDMLKMTALHWAAQHGHREVA
ELLLKYGADVHSLSKFDKTPFDIAMDTSNTELMILLQDGMQNQVNMNPEPQFIISSAGVV
NLSDLVNTTAKSGMGNWSTGYRESVSTTSVLATLAALAEASGPMGKNAGKSEDAIAADSV
DSAIQHVVGDGGQRVITIVTDQHGNLQPAGLGQQFFVTMQGQQMVAVPAGQITEEVVEQE
PYPSPARKRRIEPAAILTRPKDKKAKSGDSSREQLQKQLQEANRKAQEYRTQLLQKEQEA
EQYRLRLEEAIEQQQSNNTSNATGSTFTGVQEAEEEVVQMEKQPETEERVVEEDKVEGEE
DVPFPEDTILVKVEEELDSGEGEQITVDDTEETEKASTKVTTTPKRGRGRGRGRGRRR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcactggtggacctggggaagcggctgctggaggctgcacgggcagggctggatgat
gatgtcaggaccctcatggtcaatggagctcccttcaccactgattggctggggacttcc
ccgctccatctagctgctcagtacggacaccactccacggctgaggtgcttctccgagca
ggcgttagcagggatgcccggaccaaagtggacaggaccccactccacatggcggccaca
gagggtcactctaatatagtggagctgctagtcagtagcggagcggacatcaacgctaag
gacatgctgaagatgacagccctgcattgggcggcccagcacggtcatagagaggtggca
gagctgctgctcaaatatggagcagacgtccactccctcagcaagtttgacaagacgccc
tttgacatcgccatggataccagcaacactgagctcatgatactgttacaggatggcatg
cagaaccaagtgaacatgaaccccgagccccagttcatcatctcctctgctggggtcgtg
aacctctctgacctcgtcaacaccaccgccaagtcaggtatgggcaactggagcacaggt
tacagagaatctgtctctaccacctcagtcctggcaacactggcagccctggcagaagcc
tcaggtcccatgggtaaaaatgcaggcaaatctgaggacgcaatcgctgcagattctgtg
gattcggccattcagcatgtagtgggtgatggaggtcagagggtcatcaccatagtgacg
gaccaacacggcaacttgcagccagcgggacttgggcagcagttctttgtcactatgcag
gggcagcaaatggtggcagtcccggctggtcagatcacagaggaggtggtggaacaggag
ccttatccctctcctgcacgcaagaggagaatagagcctgcagccatcctaaccagaccc
aaagacaagaaagcgaagtcgggggacagcagtcgggagcagctccagaagcagttgcag
gaggccaaccggaaggcccaggagtaccgcacacagctcctacagaaggagcaggaggct
gagcagtaccgcctccgactagaggaggccatagagcaacaacagagcaacaataccagc
aatgctactggttctaccttcacaggtgtccaggaggcagaagaggaggtggtccaaatg
gaaaaacaacccgagaccgaggagagagttgtggaggaggacaaagtggaaggggaggag
gacgtcccatttccggaagacaccattctggttaaagtggaggaggagctggattcaggg
gagggagaacagataacagtggatgatacagaggaaacggagaaggcttcaactaaggtc
acaacgacccccaaacgggggagagggaggggacgaggacgtggaaggaggcggtag
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