Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392455
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Entry
139392455 CDS
T10872
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139392455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocla03009
]
139392455
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
139392455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_WDR75_1st
PROPPIN
Beta-prop_IFT140_1st
DUF7165
DHHW
Motif
Other DBs
NCBI-GeneID:
139392455
NCBI-ProteinID:
XP_070996585
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Position
1:24277463..24286047
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AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFDYMPTAIRAMAFNAHTERLALGRMDGSVEIFNFADHYFQEKVIPGKDS
RSIEALCWVGGRLFSAGLNGEITEYDLENLRPKYSLEAYGGPIWTITSNSQGAHLAIGCE
DGTVKLFEVLEESIQFERNLDRQKGRIISLSWHPSGTQIAAGMMDMIRVFDVPTGRAVQR
LLVDRGFGGSKSRETVVWSVVFLSDCTIISGDSAGKVQVWDGHTGTLVKTHLVTKWDVLA
LSVSKDESSVVVGTSEGTVIQFQFIAPNLQQQQDKEWVRTRTFKNHTHDVRALAEIETAI
VSGGMDTQLVVRPLLEKFDERSHASALRKIQFPHRNLVFCAKKAGLLLFQFPGQLELWRL
GESDGHGKPGDSLPLKRKPEKLLHLKRKGEDHICCSALSSCGGWLAYSTMSNVRLYRLQT
DNNDISITKVPKLPKILRSAHQLCFSSDSSKLFAASSQSSVLVIALSQSECKYVHTLKPK
SGSRQPIHLMTNSVDGKWLATANSDCEIHVYNVQKLKLHCIVPVYGSCPSAMGIHPTTNN
LTMVHADQQIFEYSIVEKQYTDWSRKLQKQGLHNLWLDRDTPVTHVTFNPKNPEQILLHD
MHMFCIIDQSLPLPDQKTQFYNQMTLRSLSEQERPSHLHAFKICKTFQDLLSVSLLDDQS
LVMVERPLLAITSQLPAPVRQKKFAT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttaaagtgcaccgggttcgatttttcgactacatgccaactgccatcaga
gctatggcattcaatgcccacacagagagattggccctgggacgaatggatgggagtgtg
gagattttcaacttcgcagaccactatttccaggaaaaggttattccagggaaggactcc
cggtcaatcgaggccctgtgttgggttggaggacgcctgttcagtgctggcctaaatgga
gagatcacagaatatgatctggaaaacctgagacccaagtactccctggaggcatacggg
ggccccatttggaccatcaccagcaattctcagggggcacacttagcaattggatgtgaa
gatgggacagtgaagttgtttgaggtactagaagagagcattcagtttgagcgcaatctg
gacagacagaaaggtcgcatcatatccctctcctggcacccctctggcacacagattgct
gctggcatgatggacatgatccgtgtctttgatgtcccgacgggtcgtgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcgggagactgtagtctggagtgta
gtcttcctgtcagactgtactatcatcagcggtgactctgctgggaaggtccaagtctgg
gacggacacaccggtacgctcgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctccaaggatgagagcagcgtggtggtggggacgtcagagggtactgtgatc
cagttccagttcattgctcctaatctgcagcagcagcaggacaaggagtgggtcagaacc
aggaccttcaagaaccacacgcatgatgtcagagccctggctgagatcgagactgccatc
gtctccggaggtatggatacccagcttgtagtgagacccctcttggagaagtttgatgag
aggtcacatgcttcggcacttcgcaagatccagtttccccatcggaatctagtattttgt
gcaaagaaggcagggctactgctcttccagttccctggccagctggagctgtggagactg
ggagagagtgatggacatgggaagccaggagacagcttgcctctgaagaggaaacctgag
aaactcctccatctcaagagaaagggtgaggatcatatctgctgcagtgctctgtcctcc
tgcggaggatggctagcctactccaccatgtccaatgtacgtctctacaggctgcagacg
gacaataacgacatcagtataaccaaggtacccaagcttccaaagatcctgcgctctgca
caccagctgtgtttctcttcagactcctccaaactgtttgctgcttccagccaatcatca
gtcctcgttattgcccttagccaatctgagtgcaagtatgtgcacaccctcaagcctaag
tcaggatccagacagcccattcacttaatgactaacagtgtggatgggaagtggctggcg
acagcaaatagtgactgtgagattcacgtctacaatgtacagaaacttaagctccactgt
atagtacctgtgtatggttcctgtcccagtgccatggggatccaccccaccaccaacaac
ctgaccatggtgcacgctgaccaacagatatttgagtactccatagtggagaagcagtac
acagactggagccgaaagcttcagaagcaggggcttcacaacttgtggttggaccgggac
acacccgtcacccacgtgaccttcaaccctaaaaatcctgaacagatcctcttgcacgac
atgcacatgttctgcatcatcgaccaaagtctgcccctccctgaccagaagacccagttc
tacaatcagatgaccctcagaagcctatcagagcaggagaggcccagtcatctccatgct
ttcaaaatatgtaaaaccttccaggacttgctgtctgtgagtctgctggatgaccagtct
ctggtgatggtggagcgccccctcctggccatcacatcccagctacctgctcccgtcaga
cagaaaaagtttgccacataa
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