Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392654
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Entry
139392654 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139392654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139392654
03036 Chromosome and associated proteins [BR:
ocla03036
]
139392654
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139392654
Coactivators
SAGA/TFTC/STAGA complex
139392654
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139392654
STAGA complex
139392654
TFTC complex
139392654
SAGA complex
139392654
SLIK complex
139392654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CENP-S
Bromo_TP
TFIID-31kDa
Apc5_N
Motif
Other DBs
NCBI-GeneID:
139392654
NCBI-ProteinID:
XP_070996895
LinkDB
All DBs
Position
33:5185364..5251313
Genome browser
AA seq
635 aa
AA seq
DB search
MAEERRPKQCTVVLPTESMKAMAESIGVGQLQEESCAALSEEVSYRIKEIAQDALKFMHH
GKRCKLTTSDIDHALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINT
PLPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKTESTEPLKAVKPGQEEEEGSIQ
KGQGATSAEAKGKKDGLMRMKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIAT
DPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAV
VTCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSWLDDKT
QWTTRYGCIAGLSELGPDVIKTLILPRLTVEGARIKAVSDGPVVSNIDKIGADHVQSLLL
KHCASVIAKARPLPDNVEQYRADYGYLGPMLCSHVVKARAQAALQAQQVNRTTLTITQQP
RPTLTVSQSGIGGSGGSRTPSIIKVPSSLTLMSTRPGTPTQPSPPATKYIVMATSSGSSS
TQQVITRTSSSVTSTVASATSTLQPLVKLESGGSGGLGGSRPLQKYIVVSLPSSSSLESK
SGVLPPSSSASPILLEARIKVDCSDSPGASTQSPH
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagcggaggccgaagcagtgcactgtggttctgcccacggagtcaatgaag
gccatggcagagtccataggagtggggcagctacaggaggagagctgtgccgccctgagt
gaggaggtcagctacagaataaaggagatcgcccaggacgcgttgaagtttatgcaccat
ggaaagagatgtaaactgacgaccagcgacatagatcatgctcttaaactgaagaatgta
gagcctctctatggcttccagtcgcaggaattcatcccgttccgcttcgccagtggagga
gggagagagcttcacttctacgaggagaaggaggtagacctcagtgacatcatcaacaca
cccctccctagagtcccccttgacgtttcgctcaaagctcactggttaagtattgaaggt
gtccagcctgcgataccagagaacccacccccagcccccaaagagcagcagaagactgaa
tctactgagcctctcaaagccgtcaagcctggtcaggaggaggaggagggctccatccag
aagggccagggagctacatctgcagaggctaaaggaaagaaggatggtctgatgaggatg
aagccccgcagtactcacgagctctcagtggaacagcagctctactacaaggagatcacg
gaggcctgcgtcgggtcctgtgaggccaagagagctgaggccctacagagtatcgccaca
gaccccgggctctaccagatgcttcccagattcagcacttttatttctgaaggggtccgt
gtgaacgtggtgcagaacaacctggccctgctcatctacctgatgaggatggtcaaggcc
ctcatggacaaccccactctctacctagagaaatatctgcatgagttgatcccagcggtg
gtgacgtgtatagtgagtaagcagctgtgtttgcggcctgacgtggacaaccactgggct
ctgagggacttcgctgcccgtctgatggcccagagctgtaagaccttcagcaccaccacc
aacaacatccagtcgcgcatcactaagaccttcaccaagagctggttggatgacaagact
cagtggacgacacgctacggctgtatcgctggactgtctgaactaggacctgacgtgatc
aagacgttgatcctgcccaggctcactgtagaaggagctcgtatcaaagctgtgtctgat
ggacctgttgtctccaacattgataagataggagcagaccacgtccaaagccttctactg
aaacactgtgccagcgtcatcgctaaagctcgtcccctgcctgacaacgtggagcagtac
cgggctgactacggttacctggggcccatgctgtgttctcatgtggtcaaggccagggcc
caggcagcactacaggcccagcaggtcaacagaaccacactcaccatcacacagcagcct
cggcccaccctaacagtgtctcagagcggaataggagggtcaggggggtcccgtaccccc
agcatcatcaaggtacccagctccctcaccctcatgtccacccgaccaggcaccccaaca
cagccatcgcccccggcaaccaagtacatcgtcatggcaaccagctcaggatcatcttcc
acccagcaggtgatcactcggacttcctcctcagtgaccagcacggtcgccagcgctacc
tccacgctgcagcctctggtcaagctggagtccggagggtccggcggcctgggggggtcg
cgacccctccagaagtacattgtggtgtccctcccctcgtcctcctctctggaaagtaag
agtggggtgctccctccctcttcttccgcctcccccatcttgctggaagccaggataaag
gtggattgctcagactcccccggcgccagcacacagtccccgcactga
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