Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392677
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Entry
139392677 CDS
T10872
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139392677
mRNA cycle factors
P-body specific factors
139392677
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
139392677
NCBI-ProteinID:
XP_070996932
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Position
33:complement(8612161..8631784)
Genome browser
AA seq
1304 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDADRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKCKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFG
VNPDGGPSALDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWSAEHQFPIDIDYMISDTLELLRPKMRLCISLEDSARQVTELEREFLVKLGLAMDGQKD
GRPSSAMGSEGEALDEDDDDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEE
ENTDYLTDSNKENETDEDNNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAV
KVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRKQETKQERIERYEKRDRQERQEKHE
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagggatgctgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagcttcgcgtccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagccttcgtcaagaagctgcgc
acgctcaccgagcagcagcgcgatgccctctccaacgactttggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctatgccgaattcgccccactg
ctcctccaggcctggaaaagacactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcact
gacaaggagggcctgtcgctcatctacgagcagctgaagagcatcatcgggacggaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgcggggacgacatt
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacggagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacaggcacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagtgcaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaagcagagctcgcc
aaaaaactgttggacgagcaaggtaaagatgaagaacaagaggatgaggaggcaagcacc
gggtcccacctgaagctcattgtggacgccttcatccagcagcttcccaactgtgtcaac
agagacctcatagacaaggctgccatggatttctgcatgaacatgaacacaaagtcaaac
aggaggaagctggtccgagctctcttcaccgttcccagacaaaggttggatctgctgccc
ttttactcccgtctggtggccacccttcacccctgcatgtccgatgtggccgatgacctg
tgctccatactcaaaggagacttcaggttccacatccggaagaaggaccagatcaacatc
gaaaccaaaaataaaactgtgaggtttatcggggagctggccaagttcaagttgttctca
aaaacggacactctgcattgtctgaagatgctgctgtcagacttctcccatcaccacata
gagatggcctgcaccctgctggagaccagtggacgcttccttttcagatcccccgactcc
cacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctg
gatgctcgctacgtgaccatggtggagaatgcctactactactgcaaccccccgcccatg
gagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgcaaactgctctac
aaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctgg
caggacccagagtctaaaggctacctgatctgctgcatggtcaacatctggaacgtcaag
tacaacagcatccactgtgtggccaacctgctggccggccttgtggcctaccaggaggac
gtgggcatccacgtggtggacggggtcctagaggacatccgcctgggaatggaggtgaac
cagcccaagttcaaccagcgtcggatcagcagtgccaagtttctgggggagctctacaac
taccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggg
gtgaacccggatggcggccccagcgccctggacccccccgagcacctgttccgcattcgc
atggtctgcaccctgctggacacctgcggacagtactttgaccgcggctccagcaagagg
aagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagtgtggag
gtgtggagtgcagagcaccagttccccatcgacattgactacatgatcagtgacaccctg
gagcttctccggcccaagatgaggctctgcatctccctggaagactccgcacgacaggtc
accgagctggagagggagttccttgttaaactgggactggccatggatgggcagaaggac
ggccggccctccagtgccatggggagcgaaggcgaggctctagacgaggatgacgatgat
gacgacgaagagggaggggcggacacagaggaacagtctggcaatgagagcgagatgaac
gagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggag
gaaaacaccgactatctgaccgactccaacaaggagaacgagacagacgaggataacaat
gaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttc
atccaggctctggacaagatgatgctggagaacctgcagcagcggagcggggaggcggtg
aaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggt
cctggtggacccgtctgctctggagagggggacgcagacatctcagacaccatgcagttt
gtcatgctcacacgcaagggcaacaagcagcagtttaagatcctgaacgtgcctttatct
tcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgagg
atgaagaagctcactctggacatcaacgagagacaggagcaagaggactaccaagaaatg
atggcgtctctggcccagcggcccgctcctgccaacaccaaccgggagcggcggccgcgc
taccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggaggaagaaag
caggaaacaaagcaggagagaattgaaaggtacgaaaagcgtgacagacaagagaggcaa
gagaaacacgagtga
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