Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392712
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Entry
139392712 CDS
T10872
Name
(RefSeq) uncharacterized protein
KO
K08127
epiphycan
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139392712
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
139392712
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Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_5
LRR_9
Motif
Other DBs
NCBI-GeneID:
139392712
NCBI-ProteinID:
XP_070997012
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Position
33:complement(22914749..22942799)
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AA seq
584 aa
AA seq
DB search
MRMLEGLILGLFVLNAVVANPRFARQVELDMYDSANYDVDLENLNLENPDVHGYEDGLTI
DEPQIEIGTLAPPNYNYPGPGGPASLEEEEEEEELPLRPQLIPQGSGGSGVLMGPDAQGE
EELRLSPIDILHISGDFGGSTGSGGSGGSGVSGGSGGSGDLLASGSGDLLASGGSGDSME
IGSAGSGDLGSGGSGYLGSGGSVGSGDLGSGGSVGSGDLGSGDSVGSGDLGFGGSGGSGD
LGSGGSGGSGDLGSLGSGGSSTLLGSGGSGDILVSSTGGSGGSGGIIIISGEEELPLIPD
TTPQEASGVSGESGAFGTSGVSGPGGSDSGGSEVTLIPDPEEEEVLLTTPKTPQESGGTV
GSGGSGLPEVDLDIKGMPTCLLCTCLGGSVYCDDVKLTSVPPLPKETTHFYARYNHITKI
NKGDFAQMNKLKRIDLTANEIASIADDAFSGLPVLEELVLRENGVSQLPALPPMMTLIDA
SHNNIGATGIHKEAFKDMTGLLYLYLTDNHIDHIPVPLPDSLRSLHLQRNNIQMIHEDTF
CNLKDFNYIRNALEDIRLDGNPINLSRTPQAYVCLPRVPIGAHI
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgttggaggggctcatattaggactcttcgtcctcaacgcagtggtggccaac
cccagatttgcccggcaggtggaattagacatgtacgacagcgctaactatgatgtggat
ctagaaaacttgaatttggagaatccggatgtccatggttatgaagatggactgactatt
gacgaacctcagatagagattggcacactggccccaccaaattataactaccctggccct
gggggccctgcatcactggaggaggaagaggaggaggaggagttgcccctaagaccccag
ctcatcccccaaggctcaggggggtctggggtactcatgggcccagacgcacagggagag
gaggagctgcgcctgagtcctattgacattcttcatatctccggggactttgggggttcc
acgggttctgggggttccggtggctctggggtttccggaggttctgggggttccggagac
cttttggcttccggttctggggaccttttggcttctggaggctcaggggattccatggaa
attggttcagcaggttctggagatcttggttctgggggttccgggtaccttggatccgga
ggctctgtgggttccggggaccttggatccggaggctctgtgggttccggggaccttgga
tccggagactctgtggggtccggggaccttggttttggaggctctgggggttctggggac
cttggttctggaggctctgggggttccggggatcttggttccctgggctctggaggttcc
agcaccctcctaggctcagggggttccggggacatattggtttccagtactgggggttcc
ggaggttctggaggaataataattatatctggagaggaggagctgcccctcattcctgac
actaccccccaggaggcatcgggtgtttctggggagtccggggcctttggcacctcaggg
gtctcagggcctgggggctccgactctggtgggtcagaggtcacattaatccctgaccct
gaagaggaggaagtgctcctgactactccgaaaacccctcaggagtctggaggtacagta
ggctcagggggctctgggttgccagaggttgacttggacattaaaggtatgcctacttgc
ctgctgtgcacctgtctgggtggttctgtctactgtgatgatgtgaagctgacgagcgtg
ccgcctctccccaaagagaccactcacttctacgcccgctacaaccacatcaccaagatc
aacaagggcgactttgctcagatgaacaagctgaagaggatcgacttgaccgccaacgag
attgcatccatcgccgatgatgcgttctccggcctgcccgtgctggaggagctggtgctc
cgtgagaacggcgtgtcacagcttcctgcccttccgcccatgatgaccctcatcgacgcc
agccacaacaacattggcgccacaggcatccacaaagaggctttcaaggacatgacgggt
ctgctgtacctgtacctaacagacaaccacatcgaccacatccctgtgcccctaccggac
agcctgcgctctctgcacctacagcgcaacaacattcagatgatacacgaggacacgttc
tgcaacctgaaagacttcaactacatcaggaacgcactggaggacattcgcctggacggc
aaccccatcaacctcagcaggaccccacaggcctatgtgtgtctgccccgcgtccccatc
ggagcccacatctaa
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