Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392723
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Entry
139392723 CDS
T10872
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocla03016
]
139392723
Enzymes [BR:
ocla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139392723
Transfer RNA biogenesis [BR:
ocla03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139392723
Prokaryotic type
tRNA splicing ligases
139392723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
139392723
NCBI-ProteinID:
XP_070997024
LinkDB
All DBs
Position
33:complement(35676563..35695460)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIQVNDRQLACARIFS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLADKGIAIRVASPKLVMEEAPESYKNVCD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggagtgttttacgtcaacgag
tccctggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggt
gggtttctccctgccatgaaacagattggaaacgttgcagctctgccgggtatagtccat
aggtccatcggcctgccagactgccactcagggtatgggttcgccatcggaaacatggct
gccttcgacatgagcgaccccaacgcagtcgtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctagacgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgaccgccaaggatctagaggaggctctagagatgggagtggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgcctcagctaggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgac
tatgctgctaagaagatgggcatcgaccacaagggccaggtgtgtgtgatgatccacagt
ggcagcagggggctgggccaccaggtggcgacagatgccctggttgccatggagaaggcg
atgaagcgagacaagatccaggtgaacgatcgtcagctggcgtgcgcccgtatcttttca
gaggagggacaagactacctgaaaggaatggccgccgccggcaactatgcctgggtcaac
cgttcctctatgaccttcctcacacgacaggcgtttgccaaggtgttcaccaccactcct
gatgacctggacatgcatgtgatctatgacgtgtctcataacatcgccaaggtggaggaa
cacatggtagatgggaaacagaagactctactgctgcatcgcaagggatccacccgggcc
ttccctccacaccaccccctcatccctgtagactaccagctgacaggccagccggtgttg
atcgggggcacgatgggcacctgcagttacgtcctgacgggcacggaacagggcatgacg
gagaccttcggcaccacctgccacggcgcgggtcgggctctgtctcgggccaaatcccgc
aggaacatcgacttccaggacgtgttggataagctggcagacaagggtatcgccatcagg
gtggcttcgcccaaactagtcatggaagaggctccggagtcgtacaaaaacgtgtgtgat
gtcgtcaacacgtgtcacgatgctggaatcagcaagaaagccatcaaactacgacccatc
gctgtgatcaagggataa
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