Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392802
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Entry
139392802 CDS
T10872
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139392802
09123 Folding, sorting and degradation
03018 RNA degradation
139392802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139392802
03041 Spliceosome [BR:
ocla03041
]
139392802
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139392802
mRNA degradation factors
5'-3' decay
Lsm complex
139392802
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
139392802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
139392802
NCBI-ProteinID:
XP_070997161
LinkDB
All DBs
Position
33:complement(30012650..30016279)
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY
IVRGDNVAVIGEIDEDTDSSLDLGNIRAEPLNSIVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgccctcgagagctacatcaaccgtacagtggccatcgttacatctgacgga
cggatgatagtgggtaccctgaagggctttgaccagaccatcaacctgattctggatgag
agtcatgagcgtgtgttcagttcctctcagggcgtggagcaggtggtcctgggactatac
atcgtcagaggagacaacgtagctgtgattggggagattgacgaggacacagattcttcg
ctggacctggggaacatccgcgctgaaccccttaactccatagtccactga
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