Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392886
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Entry
139392886 CDS
T10872
Name
(RefSeq) LOW QUALITY PROTEIN: toll-like receptor 13
KO
K18808
toll-like receptor 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139392886
Pattern recognition receptors [BR:
ocla04054
]
Membrane-bound pattern recognition receptors
Toll-like receptors
139392886
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GFIT
Motif
Pfam:
LRR_8
TIR
TIR_2
LRR_4
LRR_5
LRR_EndoS
LRR_Zer-1
Motif
Other DBs
NCBI-GeneID:
139392886
NCBI-ProteinID:
XP_070997308
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All DBs
Position
33:complement(12664937..12668818)
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AA seq
935 aa
AA seq
DB search
MRAMFSLFLLIQSVSGWMHPKCHVYNSGEYFPTWNYCPLAEQYTAACRDVTDIEEDLLGL
PSNINTLCISMKRGENSSMSLGFFARFQYLEYLYIGGCFPQILPAGNSQGLQNLQHMHIN
GLVTGCCDCYIGPNTFRDLVKLSNLTIYGYRLSAMAPDVFHCLPQLXKVSIHEPCVENLS
EILCRIVNIISLTKLNVHAPNIQSLNQSNCSILKATESNLTSVNLDFGQINRIEEGALAC
LQNLTHFSGGLNQDVLLRLPLSGIKQIRVLYSYGSNSIDFESICNVVFLLSIKEIHFANV
NTSSLSMSSVELCIGLEYMGFDGPGAFHSSPHLKLNFISSLKNLKMLYVSGQAENSLDLC
SFRKQPITWLTELTFMSSNVQTLFAKRFSCLENLRSLDLSCSFISNIEDFAFFGLANLES
LDMTQNSITQLYANTFIGLHSLTLLDLRENPQIYNIEAMSFAQLTCLRQVFLGYLNYPPR
EPVIKLNLTLVFGDVLSHLTHLHISSGMRPMQLIIGSNITSKQNLSLQLKGQTVSFEDCD
RPFFQSVTHLHADAEEFLCGSEFMGKYFRSVETFVYRSKLSAKSVDLTSMNQLIHLRKLT
LVQRSADIIFHNLTKLEVLKLSNCRIDSLEGGLTKDFKSLKTLYLRIENVYHVIYSFTEP
LSSLKYLILDTLQIFCGCDNAWLIAWAKRYRPVEVIMLNHEVMYNLEDLICLSDNGLDTP
NFVKYTEANCTTEVGFVLFAATGLGVIFFMLVVLVHNLAGPYLLPLYYITLGWLSEAMRS
NTRGRYHYDAFVSYSGKDERWVVEELLPNLEKRGPPFLHLCLHSRDFQLGKDIVENITDS
LYRSRRTLCLVSRHYLHSNWCSLEMKLATSRLQVEQRDILLLVFLEKIPPRWLSAHHRLA
RLVKTRTYLDWPQDPHQHQAFWNRLWAKLKPPTEA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgagagccatgttttccctgttcctgttgattcagagtgttagtggatggatgcatcct
aaatgccacgtttataacagtggggaatactttcccacctggaactactgtcctttggca
gaacagtacactgctgcctgtcgagatgtcacagacatcgaggaggatctgcttggactt
ccctctaatatcaataccctctgcatatctatgaaacgtggggaaaatagttccatgtct
ctgggctttttcgctcgttttcagtatttggagtatctgtacattggaggctgttttcct
caaatccttccagctgggaatagccagggccttcaaaatctgcaacatatgcacattaat
ggattggtcactgggtgctgtgattgttatattgggcctaacacattcagagatctagtc
aagctaagtaatttgaccatatatggttataggctatcagcaatggcaccagatgttttc
cattgcctacctcaattanncaaagtgtctattcatgaaccctgtgtagagaatttgtca
gaaatactatgcagaatagttaatataatttcacttacaaagttaaatgtacatgcacca
aatatacaatcgttaaaccaatcaaactgctccatcttaaaagctaccgaaagcaatcta
acaagcgtcaatttagatttcggtcaaataaaccgtatagaggaaggtgcactggcctgt
ctccagaacctgacacatttttctgggggcctaaaccaggatgtcctactgcgccttccc
ctgtctggcattaagcaaatccgggtcttgtattcctatggtagcaatagcattgatttt
gaaagtatctgtaatgtagtgtttttgctttccatcaaggaaatacattttgccaatgtc
aatacaagcagcctctccatgtccagtgttgaattgtgcattgggctggaatatatgggt
tttgatggacctggtgccttccattcttctccccatttgaaattgaattttatttccagt
ctcaaaaaccttaaaatgctatatgtatctggccaggcagaaaacagtcttgacctctgc
tcattccgaaaacaaccaatcacatggttaacagaactcactttcatgtcgagcaatgta
caaacgctttttgcaaaacggttcagctgtcttgagaacctgcggtctctagatttgtca
tgtagtttcatttcaaacattgaagactttgctttcttcggattggcaaatctggagtcc
ttagacatgacacaaaatagtataacccagttatatgcaaacacgtttattggtttacat
agtttgacattgttagacctcagggaaaatccacagatctacaatattgaagcaatgtct
ttcgcacaacttacgtgtctaagacaagtgtttctggggtacttgaactatccaccaaga
gaacccgtgataaagctgaatctgacacttgtattcggtgacgttctgagtcacctgact
catctgcacattagttcaggtatgaggccaatgcagttgattattggcagtaacatcaca
tctaaacagaacctgagtctccaactcaaaggccagacagtgtcatttgaagactgtgac
agacccttctttcagtctgtaacccatcttcatgctgatgctgaagaattcctttgtgga
tctgaattcatgggaaagtacttcaggtctgtggagacatttgtgtacagatcaaagctt
tcagctaaaagtgtggacttaacatcaatgaatcagctcattcacctgaggaaactgact
ctagtacagcgttctgccgacatcatttttcacaacctgaccaaactggaggttctgaaa
ctttcaaactgcaggattgactctttggaggggggtttaactaaagactttaaatccttg
aaaaccttatatttgcgtatcgagaacgtttatcatgtaatctacagctttactgaacct
ctctctagcctaaagtatttgatacttgatacattacagattttttgcggttgtgacaat
gcttggctcattgcatgggcaaagaggtacaggccggttgaagtgatcatgcttaatcat
gaagttatgtataatttagaggacttgatatgcttgtcagacaatggactagacacacct
aactttgtcaagtacacagaagccaactgcacaacagaggtgggctttgtgctctttgct
gcgactggcctgggagtcatcttcttcatgctggtggtgctggtccataatctggccggt
ccttacctcctccccctctactacatcacccttggctggctgtcagaggcgatgcgatca
aacaccagggggcgctaccactacgatgcgtttgtctcctacagcgggaaggacgagcgc
tgggtggtggaggagctactacccaacctggagaagaggggtccccctttcctgcacctc
tgtctgcacagcagggacttccagctggggaaggacattgtggagaacatcacagacagc
ctctaccggagccgtcgcacactctgcctggtcagtcgccactacctgcacagtaactgg
tgctccctggagatgaagctggccacctccagactgcaggtggaacaaagggacatcctc
ctcctggtcttcctggagaagatcccccctcgctggctgtctgcccaccacaggctggct
cgcctggtcaagaccaggacctatctggactggccccaggacccccatcagcaccaggca
ttctggaacagactgtgggctaaactgaaacctccaactgaagcctga
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