KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392886
Entry
139392886         CDS       T10872                                 
Name
(RefSeq) LOW QUALITY PROTEIN: toll-like receptor 13
  KO
K18808  toll-like receptor 13
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ocla04054]
    139392886
Pattern recognition receptors [BR:ocla04054]
 Membrane-bound pattern recognition receptors
  Toll-like receptors
   139392886
SSDB
Motif
Pfam: LRR_8 TIR TIR_2 LRR_4 LRR_5 LRR_EndoS LRR_Zer-1
Other DBs
NCBI-GeneID: 139392886
NCBI-ProteinID: XP_070997308
LinkDB
Position
33:complement(12664937..12668818)
AA seq 935 aa
MRAMFSLFLLIQSVSGWMHPKCHVYNSGEYFPTWNYCPLAEQYTAACRDVTDIEEDLLGL
PSNINTLCISMKRGENSSMSLGFFARFQYLEYLYIGGCFPQILPAGNSQGLQNLQHMHIN
GLVTGCCDCYIGPNTFRDLVKLSNLTIYGYRLSAMAPDVFHCLPQLXKVSIHEPCVENLS
EILCRIVNIISLTKLNVHAPNIQSLNQSNCSILKATESNLTSVNLDFGQINRIEEGALAC
LQNLTHFSGGLNQDVLLRLPLSGIKQIRVLYSYGSNSIDFESICNVVFLLSIKEIHFANV
NTSSLSMSSVELCIGLEYMGFDGPGAFHSSPHLKLNFISSLKNLKMLYVSGQAENSLDLC
SFRKQPITWLTELTFMSSNVQTLFAKRFSCLENLRSLDLSCSFISNIEDFAFFGLANLES
LDMTQNSITQLYANTFIGLHSLTLLDLRENPQIYNIEAMSFAQLTCLRQVFLGYLNYPPR
EPVIKLNLTLVFGDVLSHLTHLHISSGMRPMQLIIGSNITSKQNLSLQLKGQTVSFEDCD
RPFFQSVTHLHADAEEFLCGSEFMGKYFRSVETFVYRSKLSAKSVDLTSMNQLIHLRKLT
LVQRSADIIFHNLTKLEVLKLSNCRIDSLEGGLTKDFKSLKTLYLRIENVYHVIYSFTEP
LSSLKYLILDTLQIFCGCDNAWLIAWAKRYRPVEVIMLNHEVMYNLEDLICLSDNGLDTP
NFVKYTEANCTTEVGFVLFAATGLGVIFFMLVVLVHNLAGPYLLPLYYITLGWLSEAMRS
NTRGRYHYDAFVSYSGKDERWVVEELLPNLEKRGPPFLHLCLHSRDFQLGKDIVENITDS
LYRSRRTLCLVSRHYLHSNWCSLEMKLATSRLQVEQRDILLLVFLEKIPPRWLSAHHRLA
RLVKTRTYLDWPQDPHQHQAFWNRLWAKLKPPTEA
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgagagccatgttttccctgttcctgttgattcagagtgttagtggatggatgcatcct
aaatgccacgtttataacagtggggaatactttcccacctggaactactgtcctttggca
gaacagtacactgctgcctgtcgagatgtcacagacatcgaggaggatctgcttggactt
ccctctaatatcaataccctctgcatatctatgaaacgtggggaaaatagttccatgtct
ctgggctttttcgctcgttttcagtatttggagtatctgtacattggaggctgttttcct
caaatccttccagctgggaatagccagggccttcaaaatctgcaacatatgcacattaat
ggattggtcactgggtgctgtgattgttatattgggcctaacacattcagagatctagtc
aagctaagtaatttgaccatatatggttataggctatcagcaatggcaccagatgttttc
cattgcctacctcaattanncaaagtgtctattcatgaaccctgtgtagagaatttgtca
gaaatactatgcagaatagttaatataatttcacttacaaagttaaatgtacatgcacca
aatatacaatcgttaaaccaatcaaactgctccatcttaaaagctaccgaaagcaatcta
acaagcgtcaatttagatttcggtcaaataaaccgtatagaggaaggtgcactggcctgt
ctccagaacctgacacatttttctgggggcctaaaccaggatgtcctactgcgccttccc
ctgtctggcattaagcaaatccgggtcttgtattcctatggtagcaatagcattgatttt
gaaagtatctgtaatgtagtgtttttgctttccatcaaggaaatacattttgccaatgtc
aatacaagcagcctctccatgtccagtgttgaattgtgcattgggctggaatatatgggt
tttgatggacctggtgccttccattcttctccccatttgaaattgaattttatttccagt
ctcaaaaaccttaaaatgctatatgtatctggccaggcagaaaacagtcttgacctctgc
tcattccgaaaacaaccaatcacatggttaacagaactcactttcatgtcgagcaatgta
caaacgctttttgcaaaacggttcagctgtcttgagaacctgcggtctctagatttgtca
tgtagtttcatttcaaacattgaagactttgctttcttcggattggcaaatctggagtcc
ttagacatgacacaaaatagtataacccagttatatgcaaacacgtttattggtttacat
agtttgacattgttagacctcagggaaaatccacagatctacaatattgaagcaatgtct
ttcgcacaacttacgtgtctaagacaagtgtttctggggtacttgaactatccaccaaga
gaacccgtgataaagctgaatctgacacttgtattcggtgacgttctgagtcacctgact
catctgcacattagttcaggtatgaggccaatgcagttgattattggcagtaacatcaca
tctaaacagaacctgagtctccaactcaaaggccagacagtgtcatttgaagactgtgac
agacccttctttcagtctgtaacccatcttcatgctgatgctgaagaattcctttgtgga
tctgaattcatgggaaagtacttcaggtctgtggagacatttgtgtacagatcaaagctt
tcagctaaaagtgtggacttaacatcaatgaatcagctcattcacctgaggaaactgact
ctagtacagcgttctgccgacatcatttttcacaacctgaccaaactggaggttctgaaa
ctttcaaactgcaggattgactctttggaggggggtttaactaaagactttaaatccttg
aaaaccttatatttgcgtatcgagaacgtttatcatgtaatctacagctttactgaacct
ctctctagcctaaagtatttgatacttgatacattacagattttttgcggttgtgacaat
gcttggctcattgcatgggcaaagaggtacaggccggttgaagtgatcatgcttaatcat
gaagttatgtataatttagaggacttgatatgcttgtcagacaatggactagacacacct
aactttgtcaagtacacagaagccaactgcacaacagaggtgggctttgtgctctttgct
gcgactggcctgggagtcatcttcttcatgctggtggtgctggtccataatctggccggt
ccttacctcctccccctctactacatcacccttggctggctgtcagaggcgatgcgatca
aacaccagggggcgctaccactacgatgcgtttgtctcctacagcgggaaggacgagcgc
tgggtggtggaggagctactacccaacctggagaagaggggtccccctttcctgcacctc
tgtctgcacagcagggacttccagctggggaaggacattgtggagaacatcacagacagc
ctctaccggagccgtcgcacactctgcctggtcagtcgccactacctgcacagtaactgg
tgctccctggagatgaagctggccacctccagactgcaggtggaacaaagggacatcctc
ctcctggtcttcctggagaagatcccccctcgctggctgtctgcccaccacaggctggct
cgcctggtcaagaccaggacctatctggactggccccaggacccccatcagcaccaggca
ttctggaacagactgtgggctaaactgaaacctccaactgaagcctga

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