Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393074
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Entry
139393074 CDS
T10872
Name
(RefSeq) small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139393074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139393074
03041 Spliceosome [BR:
ocla03041
]
139393074
03032 DNA replication proteins [BR:
ocla03032
]
139393074
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
139393074
Spliceosome [BR:
ocla03041
]
Complex A
U1 snRNP components
Sm proteins
139393074
U2 snRNP components
139393074
Complex B
U1 snRNP components
139393074
U4/U6.U5 tri-snRNP components
139393074
Complex C
U2 snRNP components
139393074
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
139393074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
139393074
NCBI-ProteinID:
XP_070997519
LinkDB
All DBs
Position
33:complement(18488272..18490018)
Genome browser
AA seq
86 aa
AA seq
DB search
MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDSYMNMQLANTEEYVDGALAGHLG
EVLVRCNNVLYIRGVEEEEEDGEMKE
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atgagtttacctctgaaccctaaacccttcctgaatggcctgacaggcaagccggtaatg
gtgaagctgaagtgggggatggagtacaagggctacctagtgtctgtggacagctacatg
aacatgcagttggcgaacacagaagagtatgtagatggagcgttggctggtcaccttgga
gaagtacttgttaggtgcaataatgttttatatattagaggagtggaggaagaagaggag
gacggagaaatgaaagaatga
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