Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393092
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Entry
139393092 CDS
T10872
Name
(RefSeq) transcription termination factor 1-like
KO
K15225
transcription termination factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139393092
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription termination factors
139393092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
139393092
NCBI-ProteinID:
XP_070997541
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All DBs
Position
33:complement(17192989..17198724)
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AA seq
784 aa
AA seq
DB search
MYISGFPAMSLWSPRFHFPHVFNQREKIGYAAATMLGTPTSTKQGTSENSMLFEMSRISP
LLFEDTPELISSVAPDTVEGCKKNKKKKKTKALSEQGSEEPAIEHNQKEGHQSTVEKRGE
EPKHKEQTVTVVEKERKRLKKGKQEKQLNVVHGEMEVPDPEEQTGEKTKKKSKNLQTQPV
GAEGVTADEKNMNSRKNKRKHDDIEPERVIDSVLSKAAVDVSAVTAPDEARKSKKKHKNR
QTELEEGVESCRTVSSTAEDPEIIELHTETVKSGERMVTEAEENVKEKRKLNKKKHRESE
LNDCPDKADLPGIKEQTERKLKSKRSKTDGESAAVEGSGRKKKQHRESDKGMASVHSAAD
VLDLAVPNDNRTHDAGANGETEEGAHSVIVETGTQQHNKPCLKEETLGVDDWQALKDLKE
FIPNVESKSVDEIQKMIKYDLDRFKEFRRQGLSLRSGRFNGQENERLRSNVYDFLSLTGI
QSGSQLFHPQRFKEEEANIKKLKRQHRFHERIGEGIPRSWHQVYIRGRKMFDGSNYKGRF
TKEELHSLKKLQTLHGNKWAKISQLTGRSESSLEKRFAQMSANRGAWAEEELKRLMEAVR
KHLVGQAEPGSGPATVRKDQLYNNIPWTDVCQVVETRHWSQCRIKWLAVLKHKMACGQPV
FSGGTQSLQGKVDLIKALNAMQIEDAADIDWEEIAYTIGDVTPRYIQTHYYRLKVANVPM
WQSMSFCEIIDFLNSRVLPNFEERLQVLINSGKMVSRNDPQELFLLSEIFDNEDSDYYSE
VQNS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtacatttccggatttccggctatgtcgctttggtcgccaaggttccactttccacac
gtgttcaaccagagagagaaaataggatatgctgcagccaccatgctagggactccaaca
tccaccaaacaagggacaagtgagaattccatgttgtttgagatgtctcggatatcccct
cttctatttgaagacactcctgaattaatctcatcagtggcacctgatacagtcgaggga
tgcaaaaaaaacaaaaagaagaagaagactaaagcactatctgaacagggatcagaagaa
ccggcaattgagcataatcaaaaggaaggtcaccagtcgacagtagagaaaaggggtgaa
gaacctaaacataaagagcaaacagtgaccgtagtggagaaggagaggaagagactcaaa
aaaggaaagcaagagaagcagctaaatgttgttcacggtgaaatggaggtaccagatcct
gaggaacaaactggtgagaaaacaaagaaaaagtccaagaatcttcaaacacaaccggtg
ggagcagagggagtgactgctgatgagaagaatatgaatagccggaagaataagagaaaa
catgatgacattgagccagaacgggtgatagacagtgtcctttcaaaggctgcagtagac
gtttcagctgtaactgcaccagatgaggccagaaagagtaagaagaagcacaagaacaga
caaacagaacttgaagagggagtggaaagctgtcggacagtttcaagtacagcagaggat
ccagaaatcatagaactgcacactgaaacagtcaagagtggtgaacgtatggtaactgag
gcagaggagaacgtaaaagagaagaggaaactaaataagaaaaaacacagagagagtgaa
ctgaatgattgtccagataaagcagaccttccaggtataaaagaacaaactgaaagaaaa
ttgaagtcaaagaggtcgaaaacagatggagagtctgcagctgtggagggcagcgggaga
aagaaaaaacaacacagagagtcagacaagggaatggccagtgtccactctgcagcagat
gttttggatttagctgttccaaatgacaacaggactcatgatgctggagcaaacggtgag
acagaggagggcgctcattcagtcattgttgagacggggacccaacaacacaacaaaccc
tgcctaaaggaagaaactctaggtgtggacgactggcaggctctgaaggatctcaaagag
ttcattcccaacgttgagtcaaagtcggttgacgagatccagaagatgataaagtatgat
ctcgatcgattcaaggaattccgaagacaaggcctttccctgagaagtggaagattcaat
gggcaggagaacgaacgactgaggagtaacgtctacgacttcctgtctctcactgggatt
cagagtggctctcagctcttccatccacagcgcttcaaagaggaagaagcaaatatcaag
aaattgaagaggcagcacagattccatgaaagaataggtgaaggaatacccaggtcttgg
catcaagtctatattcgtgggaggaaaatgtttgatggcagcaactacaagggcaggttc
accaaagaagagcttcactctttgaaaaaactacagacgttgcacggcaacaagtgggcg
aagatctcgcagttgactggccgaagcgaatcgtccctagagaaacgttttgctcaaatg
tctgcaaacagaggcgcgtgggccgaggaagaactgaaaagactaatggaagctgtgcgg
aagcacctggtgggacaggcagagcctggcagtggaccggccaccgtcaggaaagaccag
ctgtacaacaacatcccctggacagatgtgtgccaggtggttgaaacacgccactggtcc
cagtgtcgaataaaatggttggctgttttgaagcacaaaatggcatgtggacaaccagta
ttcagtggcggcacacaatccttacagggcaaagtggatttgatcaaagcgttgaatgca
atgcagatagaagatgctgcagatatcgactgggaagaaattgcttacacaattggggat
gtcacgccgcgctacattcagacacactactacaggttaaaggtagccaacgttccgatg
tggcagagcatgtccttctgtgagatcatcgacttcctcaacagtagagttctccccaat
tttgaagagcgcctccaagttctgataaactcaggaaagatggtgtccagaaacgatcct
caagagctctttctcctctctgagatctttgataatgaggacagcgactactacagtgag
gttcagaacagttaa
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