KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393241
Entry
139393241         CDS       T10872                                 
Name
(RefSeq) transportin-3-like isoform X1
  KO
K15436  transportin-3
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013  Nucleocytoplasmic transport
ocla03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    139393241
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    139393241
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ocla03016]
    139393241
Transfer RNA biogenesis [BR:ocla03016]
 Eukaryotic type
  tRNA transport factors
   tRNA import factors
    139393241
SSDB
Motif
Pfam: TPR_TNPO3_IPO13_4th TPR_TNPO3_IPO13_3rd TPR_TNPO3_IPO13_2nd Xpo1 IBN_N
Other DBs
NCBI-GeneID: 139393241
NCBI-ProteinID: XP_070997811
LinkDB
Position
33:8661173..8677989
AA seq 927 aa
MEKPTVALVFQAVQALYHDPDPAGKERASVWLGELQRSMYAWELADQLLQLKQDVESCYF
AAQTMKMKIQMSFFELPPETHIALRDSLLSHIQSLKDLSPIIVTQLALAIADLALQMASW
KGCVHTLIEKYSNDVSSMTFLIEILTVLPEEVHSRSLRIGANRRTEIIEDLAYYSSTVVT
LLMTCVEKSGSNEKMLIKVFRCLGSWFNLGVLDSNFMANNQLLMVLFQVLQRDETSTNLH
EAASDCVCSALYAIENVDTHMPLALQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTEL
CETFLETTVRSPGQGMGDLRTLELLLICAGHPQYEVVEISFNFWYRLGENLYKTNDPALH
GIFRPYIQRLLHGLARHCQLDPDHEGIPEDTDDFGEFRMRVSDLVKDVIFLVGSMECFSQ
LYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLTEVLEQVVLLPETVHIAVRYTSI
ELVGEMSEVVDRNPRFLAPLYVTDPVLNYLMKGLREKTLASVAAKAIHNICSVCRDHMAQ
HFQGLLDIARALDSFALTTEAAVGLLKGTALVLARLPLEKIAECLSDLCAVQVMALKKLL
SQDPRNGKAADPTVWLDRLAVIFRHTNPIVENGQTHPCQKVIQEIWPVLSETLNTHQADN
RIVERCCRCLRFAVRCVGKGSASLLQPLVTQMVSVYQVYPHSCFLYLGSILVDEYGMEEG
CRQGLLDMLQALCMPTFQLLEQTNGLRNHPDTVDDLFRLATRFVQRSPITLLSSGIIVHI
IQCAIAATTLDHRDANCSVMKFVRDLIHTGVSNDHEDDFELRKQLIGQAMGQHGQQLVTQ
LMHTCCFCLPPYTLPDVAEVLWEIMVFDRPTFCRWLENALKGLPKETSGGAVTVTHKQLT
DFHKQVTSAEECKQVCWAIREFTRLFR
NT seq 2784 nt   +upstreamnt  +downstreamnt
atggagaaaccgacagtcgcacttgtgtttcaagctgttcaggctctttatcatgatccg
gaccccgccggcaaagagcgagcctctgtgtggctgggggagctacagagatcgatgtac
gcgtgggagttggcagaccagctcctccagctgaaacaggacgtggaatcttgttacttt
gcagcccagaccatgaagatgaagatccagatgtcgttctttgagcttcccccagagacc
catatcgccctccgagactccctgctctcacacatacagagcctcaaagacctctccccc
atcatcgtcacccagctcgctctggccattgcagaccttgccctacagatggcctcctgg
aagggctgtgtccacaccctcattgaaaagtatagcaatgacgtcagctccatgacgttt
ctgatagagatccttacagtgctccccgaggaggtccacagccgctccctacgcatcggc
gccaatcgcaggacagagatcattgaggacctggcctattactctagtactgtggtcacc
ctactgatgacgtgtgtggagaagtctggcagcaatgagaaaatgctgatcaaggtgttc
cgctgtctgggcagctggttcaacctgggagttctggacagcaactttatggccaacaac
cagctcctcatggtccttttccaagtgctgcagagagacgagacgtccaccaacctgcac
gaggccgcgtccgactgcgtgtgttcagcgctgtacgccatcgagaacgtggacacgcac
atgcccctggccctgcagctcttccagggcgtcctcacgctggagacagcctaccacatg
gccgtggcacgggaggacctcgacaaagtgttgaattactgtaggatcttcactgagttg
tgtgagacgtttctggagactacagtcaggagtccaggccagggcatgggagacctgcgg
acgcttgagctactgctcatctgtgcaggacaccctcaatatgaggtcgtggagatctcc
tttaacttctggtatcgtctgggagagaacctgtataagaccaacgaccctgccctccac
ggcatcttcagaccctatatccagagactgctgcacggcctggcccgccactgccaacta
gaccccgaccacgagggcatcccagaagatactgatgactttggggagttcaggatgagg
gtgtctgatcttgtgaaggatgtcattttccttgtgggctccatggaatgcttctcccag
ttgtactccactctaaaagaagggaaccctccctgggaggtgactgaggctgttctcttc
atcatggctgccatcgccaagagtgtagaccctgagaacaaccccaccctgacagaggtg
ttagagcaggtggtgctgctgccagagactgtccatatcgccgtgcgctacaccagcatt
gagctggtgggggagatgagcgaggtcgttgaccgcaacccgcggttcctagccccgctc
tatgtcacagaccccgtgctgaactacctgatgaagggcctgagggagaagaccctggct
tccgtggcggccaaggccatccataacatctgctctgtgtgtcgggaccacatggcccag
cacttccagggcctgctggacatcgcccgtgccctcgactccttcgccctgacgaccgaa
gccgccgtaggcctcctcaaaggtacagccctggtcctggctcgcctgcccctggagaag
atcgctgagtgtttgagtgacctgtgtgctgtgcaggtcatggccctcaaaaagcttctc
tctcaggaccccaggaatgggaaagctgctgaccccactgtctggctggacagactagct
gtcatcttccgacacacaaaccccatcgtagagaatggacagacacacccatgtcagaaa
gttatccaggagatctggccggtcctatcagagactctgaacacacaccaggctgataac
cgcatcgtggagcgctgttgtcgctgcctgcggtttgctgtgcgctgtgtgggcaagggc
tctgcctctctactacagccactcgtcacacagatggtcagtgtgtatcaggtgtatccc
cactcctgcttcctgtatctgggcagcatcctggtggatgagtacggcatggaggagggc
tgcagacaaggtctactggacatgctgcaggctctttgtatgcccaccttccagttattg
gagcagaccaacggcctccgtaaccacccagacacagtagatgacctcttcagactcgct
accaggtttgtccagcgtagtcccatcaccctgctcagcagtggcatcatcgtccacatc
atccagtgtgccatcgcggccacgacactggaccaccgggatgccaactgcagcgtcatg
aagtttgtcagagacctcatccacacgggcgtcagcaacgaccacgaggatgactttgag
ctgcggaagcagctaataggccaggccatggggcagcacgggcagcagttggtcacccag
ctcatgcacacatgctgcttctgcctgccaccttacacactccccgatgtggctgaggtg
ctctgggagatcatggtgttcgacaggccgacgttctgccgctggctggagaatgcgctg
aaggggcttcctaaagagacgtcaggcggggcggtgaccgtcacacacaaacagctcaca
gacttccacaagcaggtcaccagtgcagaggagtgtaagcaggtgtgctgggctatccgg
gagttcaccagattgttccgatag

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