Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393263
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Entry
139393263 CDS
T10872
Name
(RefSeq) DNA repair protein XRCC1-like
KO
K10803
DNA-repair protein XRCC1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03410
Base excision repair
Brite
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
139393263
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139393263
NCBI-ProteinID:
XP_070997858
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Position
3:complement(31699983..31725794)
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AA seq
631 aa
AA seq
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MPEIKLMHIVSCSTEDNTHKADNLLSSDTYRKWKAAKAGEKQTSVIIQFEKEEQVYSIDI
GNEGSAFIEVLVGHSTSVKDQDYEVLLVTSSFMSPTESRNSTNTNRVRFFGPTQLVKAQA
QEKWDRVKIVCSQPYNKSIAYGVAFVKFNSPSEKSDLPTTPTPKLTKLGQFRVKDEAPSA
CPSLQPGSLFFNRESTSKGSPALKVSPQTEKLSYASAALQSGSGSGHSSAPPSSSSPPPQ
APVKRKFEFSKERRSALAPPPSKKPSPMGSPELGTTTPKPKVKPSTASTPSPSTDKASPA
QNTPDTKKKESLPKPEAKSRPKPSKAQSSSSDAPVPINKIMEGVVFVLSGFQNPFRGDLR
DKALAMGAKYHSDWTPDATHLICAFSNTPKYSQVKSAGGVIVRKEWVLDCHKRKQKISFK
QYLMDGAESSSEGSDDESEEEKERRTPQKRREEERQPTPRKTPIKKEEEDLYGVSTDADE
PEDESGMDTEDELKRVESESWQKKGEKERKGVEEEDPFGGSTDENTDAEADEDEPIPELP
DFLTGKRFFLYGKFPNNDRRLLLRYIIAFNGAVEDYMSEKVQFVVTSEGWHDSFEDALME
NGNLSFVKPTWIFAINDRQKTLPYQPYTVVP
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaataaaactcatgcacatcgtgtcttgcagcactgaagacaatactcacaag
gctgacaacctgctgagctcggacacatatagaaaatggaaagcagcaaaggcaggggag
aaacaaacctcagtcattatacagtttgagaaagaagagcaggtgtacagcatagacata
ggaaatgaagggtctgcttttattgaggtgctggtgggacactcaacctctgtcaaagac
caggactatgaggttctgctggtcacgtcgtccttcatgtcccccacggagagccgtaac
agcaccaacaccaaccgtgtgcgcttctttggccctacccagctggtgaaggctcaggct
caggagaagtgggaccgcgtgaagattgtgtgtagccagccgtacaacaagagcatagca
tacggggtggccttcgtgaagttcaattcaccatcagaaaaaagtgatctaccaaccaca
ccaacaccgaagttgaccaagcttggccagtttcgggtgaaggatgaggccccctcggct
tgccctagtcttcagccaggcagcctcttcttcaacagagagagcacctccaaaggcagc
ccagcgctcaaggtttcgccacagactgagaagctcagctatgcatctgccgccctgcag
tctgggtctgggtctggccactcctcagccccaccgtcttccagctctcccccaccacag
gcaccagtgaagaggaagtttgagttcagtaaagagcgccggtctgccctcgctccgccc
ccctcaaagaaacccagccctatgggctcccctgaactgggcactaccaccccgaaaccc
aaggtgaaacccagcacagccagtactcccagccccagcactgacaaagcctcccctgcc
cagaataccccagacaccaagaagaaggagagcctgcccaaaccagaagccaagtccaga
cccaaaccctccaaagcccagtccagctcctctgatgcccctgttcccatcaacaagatc
atggagggggtggtgtttgtgctgagcggcttccagaaccccttccggggggacctgagg
gacaaggccctggccatgggggccaagtaccactctgactggacccctgacgccacacac
ctcatctgtgccttctccaacacccccaagtacagccaggtgaagtcagcagggggcgtc
atcgttcggaaggagtgggtgctggactgtcacaagaggaagcagaagatctccttcaaa
cagtacctgatggacggagcggagtccagctcggaggggagcgacgatgagagtgaggag
gaaaaagagaggaggactccacaaaagaggagagaagaagaacggcaacccactcccaga
aagacccccatcaagaaagaggaggaggatctgtatggtgtttccacagacgcagatgaa
ccagaagatgagtctggcatggacacggaggatgagctgaagagggtggaaagcgagagt
tggcagaagaaaggagagaaggagagaaaaggagtggaggaggaggacccttttggaggg
tcgactgacgagaacactgacgctgaggccgatgaggacgagcccatccctgagctacca
gatttcctaactggaaagcgatttttcctttacggcaagttccccaacaatgacagacgc
ctactcctgcgttacatcatcgccttcaacggggcggtggaggactacatgagtgagaag
gtccagtttgttgtcaccagcgagggatggcacgactcctttgaagacgctctgatggag
aatggtaatttaagctttgtcaaacccacatggatttttgccatcaacgatcgacagaag
acgctgccatatcagccctacactgttgtcccttga
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