Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393272
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Entry
139393272 CDS
T10872
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03440
Homologous recombination
ocla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139393272
03460 Fanconi anemia pathway
139393272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139393272
03036 Chromosome and associated proteins [BR:
ocla03036
]
139393272
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139393272
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
139393272
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
139393272
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
139393272
FA (Fanconi anemia) pathway
Downstream FA components
139393272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
139393272
NCBI-ProteinID:
XP_070997876
LinkDB
All DBs
Position
33:10497..41144
Genome browser
AA seq
2854 aa
AA seq
DB search
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSRDWGDTEKDNPGTAISCGQDGSFK
TPLGKCPLDGDMFSTPKIFRQRRPQSPETLIEDAVFFPDQGTSATEKMDTSPCLFGKSID
RTPSKSYRTRLHGDSFGLLDTPKHSTIFLFQQAHSAKRISESLGAQLDPDMSWTSSLNTP
VMSPTIILTKSEEHSPMCPVRIATDEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNG
LDSHLPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEICSTMTGVLDGAEDVLSIFFS
NKSLALQRVKTNERIKRKQSGATKEHVPTSTTEHDKVSSGRAGEYQHTRETSEPLESRTD
MKSGDLATSQWTPINVPNFLGYDMDSFHHEGSSSTKHIIPQGGKSETFRDFTGSQRPDRG
SSKHTVQVESALSRRTLPCTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQ
EKYVTQMLPASPGTAPRGENQNMKQSKTIPDEAEFNNLNKTALDGKKPLVQKSATEENIV
SQAPTKDPDLDMSQLCRVFAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKL
LNRLEWGQKPEHLNSGISDEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTESS
NVHPSSEKSYGNQSSRGFKTGNNWIISLPPEAIKKAKASLDDLIEENMTDVVTAASEVKP
VLSCVTGSRLSTEVKFISPLNIAKRSKQTSVKLNGQVHVPTHQSINVSISSHPGSGFKMA
SNKKIRFFSANLEKDEDLFEIKDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTH
QRSVNSQGPLTASQRADVSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPHQSEKELD
PDFLTGIDFDDSFNSDVETQSVKMVTPDKKTTISHCKEICQVTTTKIKSSGASSSNSTEK
SKEHVIHRRVLYIPSYSSENIAEHSFGLLTKSTNKNHLLDMDTNTSGMECERKKLDVGFK
TAGGNAMIVSEKCLSKARALFADFEEKNCAPKCAVKNTEQVEISPVQYRGEVDTNVDSNV
THFHGPEKKVDLKEPNDEYIDKIKVDFTHSHTHGDGGFQTASGKGVTISAKALQNTNAVF
KDCDAMESSGCASEKLSKTSVVSETGSNNFERNNCGFSTARGKRLDVSAKSLLTLLNDCD
ELENSKPGKIPSLNAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTKFDSGMSHDV
LGAKSKMLEPENSQTHAKDPLKNGCGFSTASGKRVSVSEGALLKAQALLSECNVDGEELS
KSKKKIRVDLHNPTQKHSGFKTAGVKEVTVSPKAHKQAQALFNNCDFNMDSLISAEAKQA
NIDVKSADGLMNNPGKSYCAFMTAGGENVHVSEKGILKAKSILNENLNCTDSNAIEEAWF
SDGRFLLLTEDGTGVKKGARNKSNDSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILN
ECDVIENPQPENGHNVHLEKIPTKETHEISHGSAASGNGVFISEKALQHVKSVYVLGETG
NVKYSVGSNPVRSHFGFSTASGKGLSVSEKALQEACDDTLARDTDPHKRSEGNRPLKVPS
PHINVQRVPVKAVRLEDREVIQTIVGMEWKSSSVECQAEYSLLNFESLGFSGCSVTQRRY
FAQEAMDCTKALLEDEDLTDHCPGTPIQANPMSCKGGFEMRSGIGKRSAEDLGMTDQPPL
KRKLLTKFDRTVDCIRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRAIQRCVDT
RLNKPEPQKTTSDPTAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVSP
FLKNNRLTREGSFKPSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIKEQDPQ
NIDKTDRGDDCGHCLPVTLGGEGATAEDSIAGQLAPDATGTLLDVVYDAECLQLARDMQD
MRIRKKKRQTIRPLPGSLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHRHVWDI
SSESAEAFRFVCRHFFRREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPK
LISEDWVFNHYRWVVWKRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALR
KIMERDDTAVKTLVLCVCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLT
DGWYAIKAQLDVPLTAMLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANG
TRAARWYTRLGFYSNPSPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFR
AGRAEEREARRHGNAKHRALEILFAKIQAQFEKEEDVTKPFPPTENHPTVCGKPRGRRRT
LRGRDIETLLDGEELYDAVENDPVYLEGRLSEEQREALNSYRRCVGERRQEALQERFRQA
LESTQEGEGRSCHNRDVTPIWKLSIADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYR
AYQLSTSEGKKRAGNTSIQLTATKKTQFQNLQASAGWLSEIFQAREAVGFRVLLNLKPLC
GEVDLVGYVISITDRQGHSPVVYLVDGWLDFVEVRCCSSLVQQGLEEVVKPLALVALSNL
QLRAHPSSPTPIRSAIPGLYAGDLVSFSTNPKEPHLQEAAAKLRTLVQGQEHFFRTAEER
LSNLVQVSVQCLPPLPWKADAKPDSRTTMKPQQSVRSVGPFTPLNSVVPPPPACFSGGDN
KVPKSLKRKRGLDYLCRIPSPPPLCPLGTMTLPSPCVNKTFNTPRRAETHRILKTPLAPA
PQHVHLPLEDEWVEDEELFMIDTQALHDGIERDT
NT seq
8565 nt
NT seq
+upstream
nt +downstream
nt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctttgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccggtactgcaatatcttgtggacaagatggcagtttcaaa
acaccattggggaaatgtccccttgatggtgatatgttctctaccccgaagattttcagg
caaagaagaccacagtctcctgagacattgatagaagatgcagtgttttttcctgatcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
aggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgcttgac
acaccgaaacactctacgatctttttatttcagcaggcacactctgccaaacgtatatct
gaaagtcttggtgcacagttagaccctgatatgtcctggaccagttctctcaatacacct
gtcatgtcgcccaccataattttgactaaaagtgaggagcatagtcctatgtgcccagta
agaattgctaccgatgagcaggttatgtttgtgcgaaagcttttcccttcggccaaggag
tctagaagcacaatgctgtcaccagaacagaatgatagacctctctgtcaacacaatgga
ctagattcccacttgcctggtgtgattgacatctcccctggctttcaagacacgttacct
ggtgacagtggcagccattggaaacagactttaccagatgctattgaggacggagaaatc
tgcagcacaatgaccggtgtcctagatggagccgaggatgtcctctccatattcttcagc
aacaaaagtttggctttacaacgggtgaagaccaacgagagaatcaaaaggaagcaaagt
ggcgcaactaaggaacacgtacctacttctacaacggaacatgacaaagtatccagtggg
agagcaggagaataccaacacaccagggaaacatctgagcctcttgagtccaggactgac
atgaagtctggggatttggcgacttctcagtggactccaataaatgtacctaacttttta
ggctatgatatggattcatttcaccatgaggggtcttcctctactaaacacataattcca
caaggtggcaaaagtgaaacattccgtgacttcactggaagccagcggccggatcgtggt
tcctcgaagcacactgtccaggtggagtctgctctttccagaagaacattaccatgcacc
agccagccagagggatctcaattgacagggtctgtagtcgaaagctctctagaacacaca
tttcccaggaaaacaaggacatttgtttactgtgtccaaaatccacttctgtcagtgcaa
gagaaatatgttactcagatgttacctgcatcacctggaactgctcccagaggtgaaaat
cagaacatgaaacaaagtaaaaccataccagatgaagctgagtttaataatcttaacaaa
actgccttggatgggaaaaagccgctagttcagaaaagtgcaactgaagaaaatattgtt
tcacaagcaccaaccaaagaccctgatcttgatatgtcacagctttgcagggtatttgcg
caagattttagccaagtaattgactacagtcaaccatgcagcaaaagagcagatgctatt
aaaaatggcttctctgcatcagcttgtctctcagcaatgagactaaggaacagaaaactg
ttgaatagactagaatggggtcagaaacctgaacatttgaactctggcatcagtgatgaa
atgcatattcctggttctcagtttagcaactctgcaaacacatctagaatgaagagtaca
gtgtgtgatagcggcttccccccctccaccctttctgatgtcacacaaacagaatcatcc
aacgttcaccctagctctgaaaaaagttatggaaatcaatcatctagagggtttaaaacg
ggtaacaactggattatctctttgcctccagaagcaataaagaaagcaaaagcatcatta
gatgacttaattgaggaaaatatgactgatgttgttactgctgccagtgaagtgaaacct
gtgttgtcatgtgtgacaggaagccgactgtccacagaagtgaagttcattagtccactc
aacattgccaaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcatgttccg
acccatcagagcatcaatgtttcgatttcctcacaccctgggtctggtttcaaaatggcc
tccaataagaagatacgctttttttcagcaaatctggagaaagacgaggatctgtttgag
attaaggatgaaatacctgcagtcaatattcccgagataagccttcctgaggaaggtaac
atgtcatgtggattggagcttgttgatggatctcatttaccacctctactctatacacac
cagaggtctgttaatagccaaggtccattgacagcctcacagagagctgatgtttcagaa
ttgtgcagtctcttagaagctgcagacagccaatttgagttcacacagtttaaaccagca
aagctgaacttctatgttccagatggtagcccccctcatcaatctgagaaagaattggat
cccgactttctcacaggcatagatttcgatgacagtttcaactctgatgttgagacgcaa
tctgtgaagatggtcacccctgacaaaaagacaactatttctcattgcaaggaaatttgt
caagtaacaaccaccaaaattaaatctagtggggcatcatccagcaattcaacagagaaa
tccaaagaacatgttatccacagaagagtactttacattcccagttatagctctgaaaac
atagctgagcattcctttggtttgttgacaaaatccacaaacaagaaccatctactcgat
atggatacgaacaccagtggaatggagtgtgaacgcaaaaagttggatgtgggttttaaa
actgctggcggaaatgctatgatagtttcagagaagtgtctgagcaaagcaagggccttg
tttgcagattttgaggaaaaaaactgtgcacccaagtgtgcagtaaaaaatacggaacaa
gttgaaatttcacctgttcaatatagaggcgaagttgacacaaatgttgattcaaatgtg
acacattttcatggccctgaaaagaaagtagatctgaaggaaccaaatgatgaatacatt
gacaagattaaagtggactttacacattctcacacacatggggatggtggtttccagaca
gccagtggtaaaggagtgaccatctcggcaaaggcccttcaaaacaccaatgcagtcttc
aaagactgtgacgctatggaaagttcaggttgtgcatcagaaaagctgagcaaaacaagt
gttgtatcagagactggcagtaataattttgagagaaacaattgtggcttcagcactgct
cgagggaagagacttgatgtttctgcaaaatctctactgactctcctgaatgactgtgat
gaattggaaaattctaagccagggaaaatccccagcttgaatgcaaagataccaagtcag
aatattcagcagaaaagtgactgtgattttaagaaacccagtattaaagcagcctccata
tcagcaaggatcccttttacagcaaaaacaaaatttgatagtggcatgtcacatgatgtt
ctaggggcaaagagcaaaatgcttgaaccagaaaattctcaaacccatgctaaagatcct
ttgaaaaatggatgtgggttcagcactgccagtggtaaaagagtgtctgtgtcagaaggg
gcgctattgaaagcacaggctcttttgagtgaatgtaatgtagatggagaggaactttct
aaatcaaagaaaaagatcagagtagatcttcataacccaacacagaagcacagtggattt
aagactgctggtgtcaaagaagttaccgtatcacctaaggcccataagcaagcacaggct
cttttcaacaactgtgatttcaatatggacagcttaatcagtgctgaagcaaagcaagcg
aatatagacgtaaaatctgctgatggtctgatgaacaatccagggaaaagctattgtgcc
ttcatgacagctggtggagagaatgtgcatgtatctgaaaaaggtattttgaaggcgaag
agcattctgaatgaaaaccttaactgcacagactcaaatgccattgaggaggcttggttt
tcagatggtagatttttgttactcactgaagatggtacaggtgtcaaaaaaggagcaagg
aacaaatcaaatgattctgacctcaacggggatgaaaagagctgtgatttcagcactgcc
ggtgggaagactgtgcatatgtccgatggagcactccagaaagcaaagtctattctgaac
gaatgtgatgtaattgaaaatccacaacctgagaatggccacaacgtgcatctggaaaag
attccaacaaaggaaacgcatgaaatctctcatggtagtgcagccagtgggaatggggtg
tttatttcagaaaaggctcttcagcatgtgaagtctgtgtacgttctgggtgagactggt
aatgtaaaatattcagttggcagtaatccagtcagaagccattttggttttagcacagcc
agtggtaaaggactgtctgtttcagagaaggcacttcaagaagcgtgtgatgatacactt
gccagggatactgaccctcacaaaagatctgaaggaaataggccactgaaggtcccttct
ccccatattaatgttcagcgtgtgccggtcaaagcagttcgactggaggaccgtgaagtg
atccagaccattgttggaatggaatggaagtcttcatctgtagaatgtcaagcggagtat
tccttgttaaattttgagtcccttggattcagtggctgctctgtgacccagaggaggtac
tttgcccaggaggccatggattgtaccaaggctcttttagaggacgaagacttgaccgat
cattgtcctggaacaccaatccaagctaaccccatgtcctgcaaggggggttttgagatg
agaagtggaattgggaaaaggtcggcagaggatttagggatgacagaccagcctcctctg
aaaagaaaactcttgaccaaattcgacagaactgtggattgtattcgacggtcaaaactc
actccagctaaaagcagttcagatggtatatttaaagacaggagagtcttcaaatataat
gtggctcttcaacctaatgtcacgaggccatatcgcgctattcagagatgtgtagacaca
aggctgaataagcccgagccacagaagacaacgtcagatccaactgccgaagaccgtaaa
ccagttagctccaagacagctgtatttgtccccccattccggaagaatgtcaagcttgag
ccacaggggagcagtggtcttcaggacaagactagagcgcctggtgtgtttgtttccccg
tttctaaaaaacaaccgcttaaccagggagggttcctttaagccttcagaagataatcat
tctcccttcatctctgaaatgcctaccaagaccacatctgttccacttcctgagtacaac
cccatcactgacactggtagtgataacgcaaaggagtccattaaggaacaggacccacaa
aatattgacaaaacggaccgaggtgatgattgtggccattgccttcctgtcaccctagga
ggagagggtgccactgcagaggattctattgcaggtcagctagcccctgatgccaccggt
acccttctagatgttgtttatgatgcagagtgcttgcagcttgcccgagacatgcaggac
atgaggatcaggaagaagaagcggcagaccattagacctctccctggcagcctgtacctg
gccaagacatctggggtggccaggctgaccctcagggaggctgttggaggttggcaccct
gtacaacacacacacaaacagctgtatggctatggagtgcaccggcatgtttgggatatc
agcagtgagagtgctgaggcgttccgctttgtttgccgacacttcttcagacgcgaggcg
tttgtagaggggtgcattcagctggccgacgggggttggctcattcctcgcaacgatgga
actgcagggaaacatgagttccacagagcattgtgtgacagccctggcgtggaccccaag
ctgatcagtgaggactgggtgttcaaccactaccgctgggtggtgtggaaacgggcctgc
atggagagggcattcccagaggtgatgggcagcctctgtctcacaccagaacaggtgctc
ctacaactgaaatacaggtacgacttggaggtggacaacagcaagaggtcagctctaagg
aagatcatggagagagacgacacggcagtcaagaccctggtgctttgtgtatgtggtgtt
gtcaccaaaggccataacccaacaaggcagagctggagtgagaccaagaccaaaacccca
cccgggagcgccgcagggtctaaagcgaagtcgtcccctgtaggcttgatctggctgacg
gatggctggtacgccatcaaggcccagctggacgtcccactgaccgccatgctccaccgg
ggccgcctggcgattgggggaaaggtgctggtccacggggccgagttggtgggatctcag
gatgcctgctccccactagaggctcctgactccctcatgttgaagattggggccaacggc
accagagcggcgcgttggtacaccaggctagggttctacagcaaccctagtccgttcctc
ctccccctctcctccctctacagcaacggaggccccgtgggctgtgtggacattgtggtg
ctgaggagctaccctacccagtggatggagaagaagtcggatggagggtttgtgttccgc
gcaggccgtgcagaggagagggaggcacggcgtcatggcaacgccaaacacagagccttg
gagatactgttcgccaagatccaggcccagtttgagaaggaggaggatgttacaaaacct
tttccgcctactgaaaatcacccaacagtttgcggtaaacccagaggccgaagacggacc
ctgcgtggtcgagacattgagacactgctggacggggaggagctgtacgacgcggtggag
aatgacccagtttatttggagggccgtctgagtgaggagcaacgggaggcgttgaacagc
tataggcgttgtgttggtgagaggaggcaagaggcactgcaggagcggtttcgccaggct
ctggaaagcacccaggagggagagggcaggagctgtcacaaccgagacgtgactcccatc
tggaagctcagcatcgctgactccagggccaagccgggcagcaatgcagtgtacctgttg
aatatctggcgcccctccatggatctgcagtccttgctgaaggagggctgtcgatacagg
gcctaccaactatccacgtcggagggcaagaaacgagccggtaatacctccattcagctc
accgccaccaagaaaacccagttccagaatttacaggcttctgcagggtggttgtctgag
attttccaagcccgagaggcggtcggcttccgcgttctcctgaacttaaagccgctctgt
ggagaggtggatctggtaggctacgtcatctccatcacagacagacaaggtcactctcca
gtggtgtatctagtggatggctggctggactttgtcgaggtgcgctgctgcagcagtctg
gtccagcagggcttggaggaggtggtcaagcctttggctctagtggccctcagtaacctt
cagctcagagcccatccctcctcccccacccccatccgcagcgccatccctggcctatac
gctggagatctagtctcgttttccaccaaccctaaggaaccacatctacaggaggctgct
gctaaactcaggacccttgtccagggccaggaacacttcttcaggactgcagaggagagg
ttatctaacttagtccaggtgtctgtccagtgtcttcctccgctgccatggaaagcagat
gccaaaccagattcaaggactactatgaaaccccagcagtcagttcgaagcgttggcccc
ttcacccctctgaacagtgtcgtcccccctccacccgcctgcttctcagggggggacaac
aaagtccccaagagcttgaaaagaaagaggggcctggactacctgtgtcgcatcccctct
ccccctccactctgccccttgggcaccatgacattaccctcgccgtgcgtcaacaagacc
ttcaacacccctcggagggctgagacccaccggatcctaaagacacctctggcccccgct
ccacagcatgtccacctgcccctagaggatgagtgggtggaggatgaagagctgttcatg
attgacactcaggccttacacgatggcatagagagagacacgtga
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integrated database retrieval system
