Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393292
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Entry
139393292 CDS
T10872
Name
(RefSeq) mRNA-decapping enzyme 1B isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139393292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139393292
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139393292
mRNA degradation factors
5'-3' decay
Decapping complex
139393292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Motif
Other DBs
NCBI-GeneID:
139393292
NCBI-ProteinID:
XP_070997914
LinkDB
All DBs
Position
33:32657193..32682217
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AA seq
683 aa
AA seq
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MTASSSGGNTCLTAKGLDISLAALQRQDPYINNIVDVASQVALYTFNNRSNEWEKTDVEG
TLFVYTRLASPRHGFTIMNRLSMENLTEPITKDLDFQLQDPFLLYRNARLAIYGIWFYDK
ADCQRIAELMKYLTKQEQALAQRGQQGQGGLVSPRALEATGDPGKGQGVDILQMLTKARN
EYDKGGQPEPKEIGGCSVLNANPSLIKPIPVKPMERYPQPGLQERPVQDSRGEPRPLSLA
TLFGVQQPRAELVSPMAGSGGPGPQGEPGGVRPAVARSLSYDDPVQAQLRLQAQEGGLIS
GSSPPQHCPAFQKLMKDAASSASSSQPQKQLQRGGPMEQLQPVSESPENRLRENGAPSVL
HHQTQARQDPIQRLFQNQPTSTTPSMTTSAPCRPRPPPLIPGLQSAHPQPLLVDALGFPG
SQHHHLPPHQAQPLYFSPTKPPQMLVPMLPSHPSQSQPPHQPQPGHPQSQPCHPFHPFQH
PQPLYLQTLPGHPQPVQLTGVVSPHELLQRLQLVQKEQSLVPEPTRPSSNLAPRFHEPAP
LAPSAPPAMGQHGQQSAHSTARSLDSLADKNSAGTAAQKFQVISPQRIPATVAPTLLLSP
SVFSQAKRPQAKASGDTHCPPGSHPPSALLAPQAPDDPQPRGLSKSQLQATLLHLIQNDS
SFLDTIYESYAHRFSTEATANKF
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgacggcaagctcatcgggtggaaacacctgtctcactgctaaaggtttggacattagt
ctcgcagccctgcaaagacaagatccttacatcaacaacattgtagatgtggcgagtcaa
gtggcgttgtatactttcaacaaccgatcaaatgaatgggagaagactgacgtggagggg
accctgtttgtctatacaaggctagcatctcccagacacggcttcaccataatgaacagg
ctgagtatggagaacctgactgaacccatcactaaagacctggacttccagctgcaggat
ccgttcctgctctacaggaacgctcgcttagctatctatggcatctggttctatgataag
gcggactgccagcgcatcgcagagcttatgaagtatctgacgaaacaggaacaggcccta
gcccagcgtggtcaacagggtcaggggggcttggtgtctcctcgagcactggaggcaaca
ggggaccctgggaagggacaaggagtggacatcctgcagatgctgaccaaagcacgcaat
gagtatgacaagggtggtcaaccagagcctaaagagataggagggtgtagtgtccttaat
gccaaccccagcctgatcaaacctatccctgtcaaacctatggagagatatccccagcct
gggctacaggagaggcctgttcaggatagtcgaggagagcccaggcctctctctctggcc
actctatttggtgtccagcagcccagagcagagctggtctctcccatggctgggtcagga
ggtccagggccccagggggagcctggaggtgtccgcccggcggtggcccgctccctgtcc
tacgacgacccagtccaggcccagctccgtctccaggcccaggaagggggtctgatctca
ggtagcagccccccgcagcactgccctgccttccagaagctcatgaaggatgccgcctcc
tccgcctcctcctcccagcctcagaagcagctccagagaggaggtcctatggagcagctg
caacccgtctccgagtcacccgagaacagactgcgtgagaacggagccccctctgtcctc
caccatcagacccaggccagacaagaccccatccagagactgttccagaaccagcccact
tccaccaccccttcaatgaccacctccgctccctgtcgtcctcgtcctcctcctctcatc
cctggtctccagtctgcccatcctcaacctctcctggtggatgctttgggcttccctggt
tctcaacaccatcacctccctcctcaccaggcccagccgttgtacttcagccccaccaag
cccccccagatgctggtccccatgttgccctcacatccctcccagtctcaacctccccac
caaccccagcctggtcatcctcagtcacagccctgtcaccctttccaccccttccagcac
ccccagcccttatacctccaaaccctgccaggtcacccccagccggtgcagctaactggt
gtcgtctccccccatgagctgctccagaggctgcagctggttcaaaaggagcagagtctg
gtcccggagcccactaggccttcctctaacctggctcctcgcttccacgagccagcccct
ctagccccctcagcccccccagccatggggcagcacggccagcagtcggctcattctaca
gccaggtctctggacagtttggctgacaagaactctgcaggcaccgctgctcagaagttc
caggtgatctccccccagcgtatcccagccacggtggcacctaccctgctcctgtccccc
agtgtcttctcccaggccaagcgcccccaggccaaagcctctggggacacccactgcccc
cctggctctcatcctccctcagccctcctggccccacaggcccctgacgacccccaaccc
aggggcctctctaagagccagctccaggccaccctgctgcacctcatacagaacgacagt
tccttcctggataccatctatgagtcctacgcccaccgcttctccacggaagccaccgcg
aacaagttctga
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