Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393324
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Entry
139393324 CDS
T10872
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139393324
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
139393324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139393324
NCBI-ProteinID:
XP_070997981
LinkDB
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Position
33:complement(2734526..2766501)
Genome browser
AA seq
1697 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSHIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLSCPSFTFQAANVVLSTPAIVPKSTLPPSVIKPCLPPVSDPKPPTR
DPRLNRAGPGALQAKESTSHKKEGHGMGGPAHTPEKQLPERPGRPERTRPPKKELLEVKT
KSKSLSPMAKGVLGKSKHYEAENVKTTADATGKKDPRLRKHLHDKADPKEEGKEKKKCTD
KEKEMDDALMKASGRGKMANGSVSKPEREKPEPVEKPENQIRGNARTNARKRSRSPSLHL
HSPKRKTERRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDPQHGTTREERVTPKK
SSSEPRRTKRPAEERPVEARDTHSSPRTTSEGKETKENAKRWRSGWEENKHLKLSSEEAH
GKGAGPPQRRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKHLENGEI
SHDDFLNVAHQIKQLFQYQEEKQRGGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTGG
VSSGADLSDAELTYYEHKSKLRRTQVMLWQQEQGGEGWDGEDSQEEVEGVLGRPGDGPGG
AKTEVNRETNALPSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLRF
RRIQDPRESTATDRLKAGERERNSPLSERLPNHRPPYDEREEPKSGYNAPPRRYGGGPLS
EDHAVKPPYPRYDDPRKHDRIPPKPPSGPVLQNSVSLALDGPIRKSPVPLPVPAYERERL
SPLQQMDAAEMSPVPRFESPNSEHSCDEGPLDTPPLPRPHHQGGPPRGPVLSSVRSKHVE
SPGHTPPHAADGPQRYDGGPKGGPPSPRYDGPHKGTQSGYDGPGHIGQPGRPHPGGRYEG
VQGPGRYDGPGCSSHGPSRYDGPYPQGPGRFDGPALHKGPEKFDGPGRYDGPSMPHVPMR
GDPQGIGGRFDGGPPPPQQGRLSGRYDGRFDGQGPGPMRFDGPMQSNRFDGPMNFNSSHM
QPGPGRFEGLMRFQQGPMRFDGAPNQPGPMRFDGPGNPSTPMGQPGPMRYDPLPSLPPQG
MPPRFDCPSGQQVSPRYHTTPNLQPPLRPLGTPMYDPVNPGGPQQFQTFPVQQNVVGQQG
ANFTVFPVPVSQAGFNNSYVRPPFYTPGVPLPPAGNMQQPMNMLSNLGQPFIPPSTVPFN
QPAPQFPPPESHFGQVDVNDLLSKLISTGIISTGGIKPAQSTDTAAANSGTESAATQPTP
PMVEEEEEEEQEEDENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDVY
ADHLDWHYRLNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQ
KTQEAAKEKEFQSVKAAADVVDETCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSC
FEDYNNTSSFLDVTPSPIKLMENPLGAFIKRESDEVTSCCAAVKQEVESSLSETGGEAQN
VKDEVQVKMEGETSAIS
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcacacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgctccacctgggatgag
atcttcccactgaagaaactctacgctctggacgtgagagtcaactctcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaagttt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccctgcacccctagtccgt
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacag
cagaagaagattgagcttgagctggagcagaccaaggcacaactgtcctgcccctctttt
acatttcaggctgcaaacgtggtactgtcaactccagcaatagtgccaaagtccaccctg
cctccctctgtcatcaaaccctgtctcccccctgtctccgaccctaaaccccccaccagg
gacccccgcctcaaccgggccggcccaggggccctccaggccaaagaatcaaccagccat
aagaaagaaggccatggtatgggaggaccagcacacacaccagagaaacaactgccagag
cgacccggcaggcccgagaggacacggccccccaagaaagaacttctagaagtgaaaacc
aagtccaagtccctctctcccatggctaaaggggtgcttgggaagagcaagcattatgag
gctgagaacgtgaagacgacagcggatgccacgggcaagaaagaccccaggctgaggaaa
catctccatgacaaggccgacccaaaagaagaggggaaagagaagaagaaatgcactgat
aaggagaaagagatggatgatgcattgatgaaggcatcaggcagggggaagatggccaac
ggctcagtcagcaaaccggagcgtgagaaaccggagcctgtagagaaaccggagaaccag
atcagaggaaatgccaggaccaacgccaggaaacgctcccgctccccctcgctgcacctg
cactcacctaagagaaagactgagaggaggtcccccaagaggagagccaggagcatctcc
ccctctcctcctttacacaaacctgggaaaggagggaggcagtcaggaggcaagcactcc
tctcaccatgaggacccccagcacgggaccaccagagaggagagggtaacccccaagaag
agctcgtctgagcccagaagaaccaagaggccggctgaggagaggccggtggaggccagg
gacacgcattcctccccccgcactacttcagagggcaaggagaccaaggagaatgccaag
cgctggaggagtggctgggaagagaacaaacatctgaagttgtcgtcagaggaggctcat
gggaagggggcaggtcctccacagagacggccgtcatactccagcagcaagagacctacc
acccccaaacagcatcgccttagtgtcgatgcaaacctgcagatcccagaggtgcttcac
tctgccagcaagagagacctgctcaaaaaggccagtaagcatctggagaatggagagatc
agccatgatgacttcctgaatgtggctcaccagatcaagcagctgttccagtaccaggaa
gagaagcagcgaggaggagactcctgggagggctccagtgaggatggtcacggacacgcc
cacccacaccacctcccaccaaccaggaagaagcccctgctggccacacccacaggggga
gtgtcctccggggcagacttatccgacgcagagctcacctactatgaacacaagtccaag
ctgaggaggacccaggtgatgctgtggcagcaggagcaaggaggggagggctgggacgga
gaggacagccaggaggaggtagagggggtgctggggaggcccggggacggccctgggggt
gccaagactgaggttaacagggagactaacgcccttccttcagggatgaagttcaccagg
cttcctaaggacaggctgaaggaggtagaggaagagcagcccaccccagcagccatcatc
caggagtacagccacgggaacgagttccccaggctcaagtctctgccagggctacgcttc
aggaggatacaagaccccagggagtccaccgccactgacagactcaaagctggtgaaaga
gagcgaaactcccccctcagtgagcggctgcccaatcacagaccaccgtacgatgagagg
gaggagcctaagagcggctacaatgcccctcccaggcggtacggaggaggtccgctgtct
gaagaccatgctgtcaaacctccgtacccccgttacgatgaccctcgcaaacacgaccgc
atcccccccaaaccccccagcggcccggtgctccagaactcagtcagcctggcactggac
ggccccattaggaagtccccggttcctttaccggtaccagcatacgagcgggagcgcctg
tccccgttacagcagatggacgcggcagagatgagccctgtcccgcgctttgagagcccc
aacagcgagcactcgtgtgacgaagggcccctggacaccccccctctacccagaccccac
caccaaggaggacccccccgtgggcccgtgctctcctcagtacgcagcaaacacgttgag
tctccaggacacacccctcctcacgccgcagatggcccccagagatatgacggtggtcct
aaaggaggaccaccttcgccacgttatgacggaccccacaagggcactcagtctgggtac
gacgggcctggtcacataggtcagcctggcaggcctcaccctgggggccgttacgagggc
gtccaggggcccggtaggtacgatggaccagggtgctcctcacacggcccatcaaggtat
gatgggccctaccctcagggccccggcaggttcgacggccccgctctacataaaggacca
gagaagtttgacggaccaggaagatacgacggcccctccatgcctcacgttccaatgaga
ggggacccacaaggcattgggggaaggtttgacggcggcccgccgcctccgcagcaaggt
aggctatcggggcgatatgacggtagatttgacggacaggggcctgggccaatgcgtttt
gacggccccatgcagtccaaccgcttcgatggtccaatgaacttcaacagctcccacatg
cagcccggccctggaaggttcgaaggactaatgaggttccagcaaggccccatgagattc
gacggcgctcccaaccagccaggcccgatgcgtttcgatggcccagggaacccctccacc
ccaatgggccagcccggccccatgcgctacgaccccctgccctctctgcccccccagggc
atgcccccacgctttgactgcccctccggccagcaggtgtctcccaggtaccacaccact
cccaacctgcagcccccgctgcggccactagggacacccatgtacgacccagtcaacccc
ggaggcccccagcagttccagacgttcccagtgcaacagaacgtggtgggccaacagggg
gctaacttcacggtgtttcccgtccctgtgtcccaggctgggttcaacaactcctacgtc
agacctccgttctacacccctggtgtgcctctgccaccggcagggaacatgcagcagccg
atgaatatgctttctaaccttggccagcccttcatccctcccagcacagtgcctttcaac
cagcctgctccccagtttcctcctccagagagtcactttgggcaggtagatgtaaacgac
ctgctgtccaagctcatttccaccggcatcatctctaccggaggcatcaaaccagctcag
agtacagacactgctgcagcaaacagcggtacagagtcagccgccacccaaccgacccct
cccatggtagaagaggaggaagaggaagagcaggaggaggatgagaatgtcccagacctc
accggcttcgtcatcgaagacatgaaacagcgctatgacagcgtggtgactaagctgtac
acagggatccagtgttactcctgcggcatgcgtttcaccgcctctcagacagacgtctac
gctgaccacctggactggcactaccggctgaaccgttccgagaaagacatcagcaagaag
gtcacccaccgccgctggtactacagcctcacggactggatagagtttgaggagatagcg
gacctggaggagcgggccaagagcctgttctttgagaaggttaatgaggaggtagtgcag
aagacccaggaggccgccaaggagaaggagttccagagtgttaaagcagctgcagatgtg
gtggatgagacgtgtgagatctgccaggagcagtttgagatgtactgggaggaggaggaa
gaggagtggcacctgagagatgccatcagagttgacgagaagacatatcatccttcatgt
tttgaagattacaacaatacatcttcgttcctggacgtcaccccgtcccccattaagctg
atggagaacccgctgggtgcgttcattaaacgtgagagcgatgaggtcacttcctgctgt
gctgcggtgaaacaggaagtggagtcttcgttgtctgagacgggcggtgaggctcaaaat
gtgaaggatgaagttcaggtgaaaatggagggagaaacgagtgcaatttcctaa
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