Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139394108
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Entry
139394108 CDS
T10872
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
ocla03420
Nucleotide excision repair
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
139394108
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139394108
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139394108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139394108
NCBI-ProteinID:
XP_070998228
LinkDB
All DBs
Position
Unknown
AA seq
786 aa
AA seq
DB search
MGKKDRGDRERKSSKKRVYDEEEDEEEAMGSESQEAIPAAAGKTVDELAIKLDEYGAKDY
RLQMLLKNDHGSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPVHVHEYKLTAY
SLYAAVSVGLQTSDIVEYLQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAF
PEVIQRLLQDSVIRDCRLRTAEGTDTELITEVVHSKSAISKSLQDNGAGASTSAGAPEGQ
TPGATQVPEDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEELQKRCINMEYPLLAEYDF
RNDTVNPDINMDLKATAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTV
RKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTT
KRSWEAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKI
VDLNFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKRRILLYTMN
PNKFRACQFLIKFHERRNDKIMVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFK
HNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNA
YFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKMAGMEEDNLMFSSREEQYQLLQKVL
AATDLDAEEEVVIGENGRPMFQRRPGTMSSMSGADDSVYMEYRSRGSRAHLGNNIHPLFK
RFRKGP
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaaagataggggagatcgggagaggaagtcttctaagaagcgtgtgtatgac
gaagaggaggatgaggaggaggcgatgggcagtgagtcccaggaggccatccctgcagcg
gccggtaaaacggtggatgagttggccatcaagctggacgagtatggggctaaagactac
cggctgcagatgttgctgaagaacgaccacggatcacgacctctctgggtggctccagat
ggacacatcttcctggaagccttctctccggtgtataagtatgcccaggacttcctggta
gccatagcagagccagtgtgtcgtccggtccacgttcatgagtacaagctgacagcctac
tccctctacgctgctgtgagcgtcggtctacagacctcagacatcgtggagtatctccag
aaactcagcaagacgtctgtaccagacggcatcgtgcagttcatcaagctctgcactgtg
agctacggcaaggtgaagctggtgctgaaacacaaccggtactttgtggagagtgcgttc
cccgaggtgatccagcgtcttcttcaggacagtgtgatcagagattgtcgtctccgaacc
gcagagggaacagacaccgagctcatcactgaggtcgtacacagcaagtcagcgatctct
aagtccctccaggacaacggagcaggggcctccacgtcagcaggggcccctgagggccag
acgccaggagccacccaggtaccagaggacatattcagctactatgaacagatggacaag
gaggaagaggaggaggaggagacgcagaccgtgtccttcgagatccgacaggagatgatt
gaagagcttcagaagaggtgtattaacatggagtatcctctactggccgagtacgacttc
cgcaacgacacggtgaaccctgacatcaacatggacctgaaggccacagctgtactcagg
ccttaccaggagaagagcctccgcaagatgtttggtaacggccgagcccgctcgggagtc
atcgtgctaccttgtggtgcggggaagtctctagtaggggtaactgcagcctgtacggtt
cgtaagcgctgcctggtcctggggaacagctctgtgtcagtagaacagtggaaggctcag
tttaagatgtggtcgaccatcgacgactctcaaatctgccgcttcacctcagatgccaag
gacaagccgattggctgctcggtggccatcagtacgtacagcatgttgggacacaccacc
aagaggtcttgggaggcagagagagtgatggaatggatgaggtcccaggagtggggtctc
atcatcctggatgaggtgcacactatccctgctaagatgttccgtcgggttctgaccatt
gtccaggcccactgtaagctgggtctgaccgctacgctggtccgagaggacgacaagatc
gttgatctcaacttcctgattgggcccaagctgttcgaggcgaactggatggagctccag
aacaacggatacatcgctaaggtccagtgtgccgaggtgtggtgtccgatgtccccggag
ttttaccgggaatacgtggccatcaagacgaagagacgtattctcctctacaccatgaac
cccaacaagttcagagcctgtcagttcctcatcaagttccacgagagacgcaacgacaag
atcatggtgttcgccgacaacgtcttcgctctgaaggagtacgctatccgcctcaacaag
ccctacatctatggccccacctctcagggagagaggatgcagatcctacagaactttaaa
cacaaccccaagatcaacaccatcttcatctccaaggtgggtgacacgtcctttgacctc
cccgaggctaatgttctgatccagatctcctctcatgggggttctcgcagacaggaggct
cagaggctgggcagggtgctgcgagccaagaaaggtatggtcgcggaggagtataatgcc
tatttctactcgttggtgtctcaggatactcaggagatggcctacagtaccaagagacag
aggttcctagtggaccagggatacagcttcaaggtcatcactaaaatggcggggatggag
gaggataatctgatgttctcctccagagaggagcagtatcagctgctccagaaggttctg
gcggctacagacctcgacgcagaggaggaagtggtcatcggagagaatggacggccaatg
ttccagcggaggccaggtaccatgagctccatgtccggggctgacgattctgtctacatg
gagtatcgctctagaggcagccgggcccacctgggtaacaacatccacccgctcttcaag
cgcttcaggaagggcccgtag
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