Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139394234
Help
Entry
139394234 CDS
T10872
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139394234
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139394234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
DUF4959
VWA_3
Fn3_nematode
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
139394234
NCBI-ProteinID:
XP_070998357
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLGTSKLHVSWKEPKGNVDG
YRVLYQSEPGEEYKELRVSKGDHKVVIQDFDAMKEYHVRVLAVRGNQQSRALQGKYAAED
LEGEGGERESTLPLRLDDTGGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVSAFSVGIDQTRIGLAQYSGDPRIEWHLNAFTTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSVMSSIIEGLTQIVCERVEEQDKEIKGESAGQETQ
GAPQDLVTSEVTARSFMVSWSHAPGSVEKYRVVFYPATQGGRPEEAVVDGTENSVVLRHL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
MVLYAPLTEDQASDEKEMKVSDAVTDLQLEDLTPATEYTVTVYAMYGEEASDPMSSQQTT
LPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYHIMYVKTDGLKTDEVDVGPVTSWTLND
LMSAREYEVAIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVTAESFRVSWDHSAPGIV
LYKLTWAPYDGGDTKEMALSGDVDSFLLSGLSPNTEYEVMLQAVFKDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPMVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPHRQADLYRVVIESLLNGQKQE
VSVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGPAVTTITTTLPAPTQPPTPPPTSPPL
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFKLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMPGFRMMDMFGLVEKEYSNVEGVSLEPGSF
NSFPCYRLHKDALVSQPTKYLHPEGLPSDYTLTILFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNHDYKGDFQTVTFDEPDIKKMFYGSFHKLHMAISKTTARVVVDCK
VVGGKPINAAGNISTDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDVGLPGPQGIGGSPGGSGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATV
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGERGLPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPAGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGVQQLPHTNYQNYHPTGRYDPRGNYNN
DDEDDEEDEEEEDPFAGYRGYPPQYYQPSYPHPPAHPAPQSHSQDTELRSPGIMMSRFSR
DVVTQRRATANTAQTGQTDQTGQTGQTDQTGQRSDAAADTEGEVEVIGEVQTGQTGQRSD
VAADSEGEVEVIGEVQTGQTVQPPLYVPVG
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaagattacgttttaaa
gtactggggacgagcaaattacatgtatcctggaaagagccgaaagggaatgtcgacggc
tatagagttttataccagagtgaaccaggcgaagagtacaaggagctgcgcgtttccaag
ggggaccataaagtggtgatccaggactttgatgccatgaaggagtaccacgtcagggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgccgctgaagac
ctggagggggagggaggagagagggagagcacattgcctctgagacttgatgacaccgga
gggactgaggagatcaacgagatatctggagcggatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcgggaggctcaacttccgc
ttggtccgcatgttcctggagaacctggtcagcgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
accactaaagatgcagtcctggatgctgtgaagaacctgccctataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcaggctcc
aggagcggggtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccattggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcgtcatgagctctatcatagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcaggtcaggagacacag
ggagcccctcaggacctagtgacatcagaggtgacagccaggagtttcatggtgtcctgg
agtcacgctcccggcagtgtagagaagtaccgtgtggtgttctaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgcggcatctc
aactccttaacagagtaccagttagctgtgttcgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgcccccctgaccgaggaccaggcctccgacgagaaagagatgaaggtg
tcagacgcagtaactgatctacagctggaggacttgactcctgccactgagtacacggtg
acagtctacgccatgtatggagaagaagctagcgatcctatgagtagccagcagaccacc
ttgccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggaagctgcctctaggaaggtgacaggataccacatcatgtacgtcaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgatgtctgcaagggagtatgaggtagccatatttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaccctgtaccaggccctcttgacctccaggcc
agtgaggtcaccgcagagagcttccgggtcagctgggatcactctgctccgggcatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagatggctctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccgtcttcaaagaccaatcagagagtgatgcggtgttagtggtggagacgaca
cttgccaggacaacaacggttgccaccacaacgccagtggtgcgtcaggcggtgagaggc
ctgcaggtccaagaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
atggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gtcctggtgcctgggcagcagaccacagtccttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatggacaggacggcatcagtgtttcttct
gtgggcagaacattgcccctctcggcgcctagcaacctgagggtgtctgaggagtggttc
agtcgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacctctgtgccagggtcagctctggagacctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcaaagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccaacctctccagggcaccgccaagacattgtacctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtatgtgtgtccagtggcagccccat
cgtcaggctgacctctacagggtggtcatcgagtctctactcaatggccagaaacaggaa
gtgagtgttggaggctctgcgtctagacagtgtttctatgatctgacccctaacagccag
tataagatcagcgtttccacccagctacaggacatggaggggcccgccgtcaccaccatc
actacaacactccccgcccccacccagccaccgacaccaccccccacgtcacccccccta
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacgggtcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggactgagttcaagctgaactcatacgccaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgggccatt
aagcatgtgaaggaatctatcttcacctcagagggaggagtgaggaggggggttcctaag
gtactggtggtcctcaccgatggccgttcccaagacgacgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccattggctttgctgatgcggactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcggttctgatgagcggcaacaccatgccaggcttcaggatgatggacatgttt
ggcctggtagagaaggagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttcccctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtttgccctctgactacaccctcaccatcctgttccgcctgctacca
gacaccccccaggagccctttgcattatgggagatcctcaacaaagacaatgaacccctg
gttggggtcatcctggacaatggtgggaagactctgacgttcttcaaccacgactacaag
ggagacttccagacagtcacttttgacgagcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatggcgatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgcagctggcaacatcagtacagacggggtggaggta
ctgggacgcatggtacgatccagagggaagagagacaactcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggaggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
cctggaccacagggcccccctggtcctcaagggcctagtggacattccatccagggacca
ccggggggtgatggtgaaaagggagaaaagggagatgttggtttaccaggacctcagggt
attggtggatctcctggcggatcaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacagggcccgtcggcagtcctggagcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacctgcagtctcaagctaccgtc
agggccttagcacgccaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggacggtaccgggacctcca
ggagagcctggtcgcaggggtctgccagggccacagggagagggggggcccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggagagaggtctcccagga
gagaagggggaaagggggagtcaaggtgtggggacacagggccccagaggtcccccagga
ccaccaggtcttctaggagaggggcgtacaggcagccaaggccccgccggtagaccaggc
agccagggtaccccagggcgaccaggcacccctggatccacgggccctgctggtgctgct
ggctactgcgatcagaactcctgtttgggctacaacgttggagtacaacaactcccccac
accaactaccaaaactatcaccccactggccgttatgacccccgtggaaattacaacaac
gatgatgaagacgacgaggaagatgaggaggaagaagacccattcgctgggtatagaggc
tacccacctcagtactaccagcccagttaccctcacccccctgcacaccctgcaccccaa
tcccactcccaggacactgagctaaggtccccagggataatgatgagccgtttctccaga
gacgtggtcacacagagaagagccaccgctaacacagcccagacaggacagacagaccag
actggacagacaggacagacagaccagactggacagaggagcgatgctgcagcagatact
gaaggagaggtggaggtgattggagaagtccagacaggacagactggacagaggagcgat
gttgcagcagattctgaaggagaggtggaggtgattggagaagtccagactggacagaca
gtccaaccacctctctatgtccctgtgggttga
DBGET
integrated database retrieval system
