Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139394290
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Entry
139394290 CDS
T10872
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139394290
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139394290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
FN3_Tor_3rd
Interfer-bind
DUF4959
VWA_3
Fn3_nematode
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
139394290
NCBI-ProteinID:
XP_070998416
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MLIVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLGTSKLHVSWKEPKGNVDG
YRVLYQSEPGEEYKELRVSKGDHKVVIQDFDAMKEYHVRVLAVRGNQQSRALQGKYAAED
LEGEGGERESTLPLRLDDTEGTEEINEISGADPFVCTTQAIADIVILVDGSWSIGRLNFR
LVRMFLENLVSAFSVGIDQTRIGLAQYSGDPRIEWHLNAFTTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGIELFAIGVK
NADENELRAIASEPDNTHVYNVADFSVMSSIIEGLTQIVCERVEEQDKEIKGESAGQETQ
GAPQDLVTSEVTARSFRVSWSHAPGSVEKYRVVFYPATQGGRPEEAVVDGTENSVVLRHL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
MVLYAPLTEDQASDEKEMKVSDTVTDLQLEDLTPATEYTVTVYAMYGEEASDPKSSQQTT
LPLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYVKTDGLKTDEVDVGPVTSWTLND
LTSAREYEVAIFGIYDEGQSEALSGSFTTDPVPGPLDLQASEVTAESFRVSWDHSAPGIV
LYKLTWAPYDGGDTKEMALSGDVDSFLLSGLSPNTEYEVMLQAVFKDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQEETTYSLEVSWQLEDPKVDQYRVTYVSLTGDRNEES
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGITVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTLGFRVVYQPTSVPGSALETFVGDDVNTMLILNLQSDTEYTVKVISS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSMCVQWQPHRQADLYRVVIESLLNGQKQE
VSVGGSASRQCFYDLTPNSQYKISVSTQLQDMEGPAVTTITTTLPAPTQPPTPPPTSPPL
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDLIGPDGTQVAIAQ
FSDDARTEFKLNSYANKETLLDAIRRITYKGGNTKTGRAIKHVKESIFTSEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMPGFRMMDMFGLVEKEYSNVEGVSLEPGSF
NSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITILFRLLPDTPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFFNHDYKGDFQTVTFDEPDIKKMFYGSFHKLHMAISKTTARVVVDCK
VVGGKPINAAGNISIDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGDRGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGDGEKGEKGDVGLPGPQGIGGSPGGSGRDGPVGQRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGDKGERGDLQSQATV
RALARQVCEQLIQSHLSRYSSILNQIPSQSVSVRTVPGPPGEPGRRGLPGPQGEGGPTGR
PGFPGTNGQDGRPGERGLPGEKGERGSQGVGTQGPRGPPGPPGLLGEGRTGSQGPAGRPG
SQGTPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGVQQLPHTNYQNYHPTGRYDPRGNYNN
DDEDDEEDEEEEDPFAGYRGYPPQYYQPSYPHPPAHPAPQSHSQDTELRSPGIMMSRFSR
DVVTQRRATANTAQTGQTDQTGQTGQTDQTGQRSDAAADTEGEVEVIGEVQTGQTGQRSD
VAADSEGEVEVIGEVQTGQTVQPPLYVPVG
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagcccctgcccagggtcaagttccagctcccagaagattacggtttaaa
gtgctgggtacgagcaaattacatgtatcctggaaagagccgaaagggaatgtcgatggc
tatagagttttataccagagtgaaccaggcgaagagtacaaggagctgcgcgtttccaag
ggggaccataaagtggtgatccaggactttgatgccatgaaggagtaccacgtcagggtt
ctagctgtgagagggaaccagcagagcagagcactacaagggaagtatgccgctgaagac
ctggagggagagggaggagagagggagagcacattgcctctgagacttgatgacaccgaa
gggactgaggagatcaacgagatatctggagcggatccttttgtctgtacgactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcgggaggctcaactttcgc
ttggtccgcatgttcctggagaacctggtcagcgctttcagcgtcgggatcgaccagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatttgaatgccttc
accactaaagatgcagtcctggatgctgtgaagaacctgccctataagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcaggctcc
aggagcggggtacccaaagtcggtatcctaatcacagatgggaagtcccaggatgacgtg
atcccccctgcccagagcctgagggacgctggcatcgaactcttcgccattggtgtaaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcgtcatgagctctatcatagagggactgacccagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcaggtcaggagacacag
ggagcccctcaggacctagtgacatcagaggtgacagccaggagtttcagggtgtcctgg
agtcacgctcccggcagtgtagagaagtaccgtgtggtgttctaccctgctacccaggga
ggacggcctgaagaggctgtggtggacggcacagagaactctgtggttctgcggcatctc
aactccttaacagagtaccagttagctgtgttcgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctctccccatggtgaacggcctggagctgtac
gacgttacccacaacaccatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
atggtcctatacgcccccctgaccgaggaccaggcctccgacgagaaagagatgaaggtg
tcagacacagtaactgatctacagctggaggacttgactcctgccactgagtacacggtg
acagtctacgccatgtatggagaagaagcaagcgatcctaagagtagccagcagaccacc
ttgccactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggaagctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagact
gacgggctaaagactgatgaggtggatgtgggtccagtcacgtcctggactctgaatgac
ctgacgtctgcaagggagtatgaggtagccatatttgggatctacgacgagggccaatca
gaagccctctctggcagcttcaccaccgaccctgtgccaggtcctcttgacctccaggcc
agtgaggtcaccgcagagagcttccgggtcagctgggatcactctgctccgggcatcgtc
ctctacaaactgacctgggctccttatgatggaggggacactaaggagatggctctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacagagtatgaagtgatg
ctccaagccgtcttcaaagaccaatcagagagtgatgcggtgttagtggtggagacgaca
cttgccaggacaacaacggttgccactacaacgccagtggtgcgtcaggcggtgagaggc
ctgcaggtccaagaggagaccacctacagcctggaggtgtcatggcagctggaggatcct
aaggtggaccagtacagagtcacctacgtcagcctcacaggagaccgcaacgaggagtca
gtcctggtgcctgggcagcagaccacagtccttctccagcctctgctgtctgacacagag
cacaaggtgacggtcaccccagtctacacagatggacaggacggcatcactgtttcttct
gtgggccgaacattgcccctctcggcgcctagcaacctgagggtgtctgaggagtggttc
agtcgcttccgcatcacctgggacacgcctccttctcccaccttgggcttcagggtagtc
taccaacccacctctgtgccagggtcagctctggagacctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcaaagtgacactgagtacactgtgaaggtcatctcttcc
tacaccacgggatccagccaacctctccagggcaccgccaagacattgtacctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtatgtgtgtccagtggcagccccat
cgtcaggctgacctctacagggtggtcatcgagtctctactcaatggccagaaacaggaa
gtgagtgttggaggctctgcgtctagacagtgtttctatgatctgacccctaacagccag
tataagatcagcgtttccacccagctacaggacatggaggggcccgccgtcaccaccatc
actacaacactccccgcccccacccagccaccgacaccaccccccacgtcacccccccta
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacgggtcttggagcatcggagacgacaacttccagaagattatccgcttcctgtac
agtacgatgggagctctggatctgattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggactgagttcaagctgaactcatacgccaacaaggaaacgctg
ctcgacgccatcaggcgaatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggaatctatcttcacctcagagggaggagtgaggaggggggttcctaag
gtactggtggtcctcaccgatggccgttcccaagacgacgtcaacaaggtctccaaggag
atgcagatggaaggctacatcatctttgccattggctttgctgatgcggactacggagag
ttggtgaacatcgccagcaaacccagcgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcggttctgatgagcggcaacaccatgccaggcttcaggatgatggacatgttt
ggcctggtagagaaggagtacagtaacgtagagggagtgtccctggaaccaggctccttc
aacagcttcccctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtttgccctctgactacaccatcaccatcctgttccgcctgctacca
gacaccccccaggagccctttgcattatgggagatcctcaacaaagacaatgaacccctg
gttggggtcatcctggacaatggtgggaagactctgacgttcttcaaccacgactacaag
ggagacttccagacagtcacttttgacgagcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatggcaatcagtaagaccacagccagggtggtggttgactgtaag
gtagtgggaggaaagcccatcaacgcagctggcaacatcagtatagacggggtggaggta
ctgggacgcatggtacgatccagagggaagagagacaactcagctccgttccagatccag
atgtttgacattatctgcagcacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcccggacccacaggacctcccggtggtgctggtatcagaggggccagg
ggagatcgaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
cctggaccacagggcccccctggtcctcaagggcctagtggacattccatccagggacca
ccggggggtgatggtgaaaagggagaaaagggagatgttggtttaccaggacctcagggt
attggtggatctcctggcggatcaggaagagatggaccagttggacagaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacagggcccgtcggcagtcctggagcc
cccggggcccctggtggaagtggctctcctggacccctgggagaccagggaccacctggc
tctgctggtaccaaaggagacaagggtgaacggggagacctgcagtctcaagctaccgtc
agggccttagcacgccaagtgtgtgagcaactgattcagagtcacctgtctcgctacagc
tccatcctgaaccagatccccagccagtcagtgtctgtgaggacggtaccgggacctcca
ggagagcctggtcgcaggggtctgccagggccacagggagagggggggcccacaggcaga
ccagggttccctgggaccaacggacaggatggacgaccgggggagagaggtctcccagga
gagaagggggaaagggggagtcaaggtgtggggacacagggccccagaggtcccccagga
ccaccaggtcttctaggagaggggcgtacaggcagccaaggccccgccggtagaccaggc
agccagggtaccccagggcgaccaggcacccctggatccacgggccctgctggtgctgct
ggctactgcgatcagaactcctgtttgggctacaacgttggagtacaacaactcccccac
accaactaccaaaactatcaccccactggccgttatgacccccgtggaaattacaacaac
gatgatgaagacgacgaggaagatgaggaggaagaagacccattcgctgggtatagaggc
tacccacctcagtactaccagcccagttaccctcacccccctgcacaccctgcaccccaa
tcccactcccaggacactgagctaaggtccccagggataatgatgagccgtttctccaga
gacgtggtcacacagagaagagccaccgctaacacagcccagacaggacagacagaccag
actggacagacaggacagacagaccagactggacagaggagcgatgctgcagcagatact
gaaggagaggtggaggtgattggagaagtccagacaggacagactggacagaggagcgat
gttgcagcagattctgaaggagaggtggaggtgattggagaagtccagactggacagaca
gtccaaccacctctctatgtccctgtgggttga
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