Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139394560
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Entry
139394560 CDS
T10872
Name
(RefSeq) beta-1-syntrophin-like isoform X1
KO
K24064
beta-syntrophin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139394560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntrophin_4th
PH_17
PDZ
PH
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
139394560
NCBI-ProteinID:
XP_070998756
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MAVATVISGNRVEKSGFLEVLVRDRWHNVLANLNEEALTLSCEDLGENVTLNGITNGSYG
CNATHPDHTNSRRTAVRTAFTDLQEQVPEAIANRKRCVKVIKQEVGGLGISIKGGKENKM
PILISKIFKGLAADQTQALYVGDAILSVNGVNLRDATHDEAVQGLKRAGREVTLEVKYMR
EASPYVKKGSPVSEIGWETPPPESPRLGSPHRDVPVTPTMSLQGDRRYIPLKMCYVTRSM
TSPDPGNRQLELHSPDAKHTVVLRCRDAASAQAWFEVMQSATSDLINKVITEVKEHTGRT
GIAGSREIRHLGWLAEKTENEKQQWKPVLVMVTEKDLLLYHSLPRMKASWHSPAHTYPLL
ATRLVHSGPDRGSPQPGVELSFATRTGTRLGIEAHLFRAETCQDLSLWTRHIVTGCHSSA
QMIKEVTTSCVYKGQECRLVIHYEQGFSVLAEEKGEDQVDQGNQNQAKPLLCYPFERLKM
SSDDGVRMLFLDFSGKEGEIQLDLHSCPKPIVFILHSFLSAKIARLGLVA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctacagtcatttcggggaaccgagttgaaaaaagtggatttttggaggtt
ttagtgagggaccgatggcacaatgttttggccaacttgaacgaagaagctctaacgttg
agttgcgaggacctgggagagaatgtgaccctaaacggcatcaccaatggatcttacggg
tgcaacgcaactcacccggatcacacaaacagtcggagaactgcggtgaggacagctttc
acggatttacaggagcaagtcccagaagcgatcgcaaacagaaaaagatgtgtgaaagta
ataaagcaagaggtaggaggactcggcatcagcataaagggaggaaaagagaataaaatg
ccgatacttattagtaagatcttcaaaggtctggctgcggatcaaacccaagccttgtat
gtcggtgacgcgattctgtcggtgaacggtgtgaacctgcgggacgctacgcatgacgag
gcggtgcaggggctcaaacgagccgggagagaggtgacgctagaagtgaagtacatgaga
gaagccagcccctatgtgaagaagggttctcctgtgtcagagataggctgggagacgccc
ccacctgagtccccgaggctgggtagcccccaccgtgacgtccccgtcacccccaccatg
tccctacagggggacaggaggtacatccccttaaagatgtgttacgtcaccaggagcatg
acttctccagaccctggaaacaggcagttagagctgcactctccggacgccaagcacacg
gtggtgttacggtgtagagacgcagcctcggcccaggcctggttcgaggtcatgcagtcg
gcgacctctgacctcatcaacaaggtcatcacagaggtcaaagagcacacgggaagaaca
ggaatcgcagggagcagagagatcagacacctgggctggctggctgagaagacagagaat
gagaagcagcagtggaagcccgtgctggtgatggtgacagagaaagacctgctcctctat
cacagccttccacgcatgaaggcttcctggcacagccctgcacacacatacccactgtta
gctacacggctggtgcactctggtcccgaccgaggctctccccagccgggcgtggagctg
tccttcgccacacgtacgggaaccaggctgggcatcgaggcccacctgttcagagctgag
acctgtcaggacctttcactgtggaccaggcacatcgttacgggctgtcactcctctgcc
cagatgatcaaggaagtcactaccagctgtgtgtacaagggccaggagtgcaggctggtg
atccactacgagcagggcttctctgtcctggctgaagagaagggggaggaccaggtggac
caggggaaccagaaccaagccaaacctctcctctgctaccccttcgaacgcctcaagatg
tcctccgacgacggggtcaggatgctcttcctggatttcagtggaaaagagggtgaaatt
cagctggacctccactcgtgcccaaagcctatcgtcttcatcctccactcattcctctcg
gcaaagatcgccagactcggcctggtagcataa
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