Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139395456
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Entry
139395456 CDS
T10872
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139395456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139395456
03021 Transcription machinery [BR:
ocla03021
]
139395456
03036 Chromosome and associated proteins [BR:
ocla03036
]
139395456
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
ARID
139395456
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139395456
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139395456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
139395456
NCBI-ProteinID:
XP_070999071
LinkDB
All DBs
Position
3:complement(41552736..41573252)
Genome browser
AA seq
2348 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPHEDSILGEKQQENKQPGLERGSPVRGDLHDGADV
GNAGGGGEPEMKNGNGNPSRTNNNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVPSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRIYPNYPSSEYSNQEGASKGPTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPIAKLRGQPYGGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLGSQRYPV
VMQGRTPGTIGGMQYGQQMPSYGQQGPGGYGPQGQGPYYGQQGQALHPGQQQGPYPQAPL
GQQGGQTPYPQQSHPPQTSASHAQGGPPYPQPHMPPQSQGPQPGPSQGPPQSQPPYSQGP
AQAQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPPTQGPQQLPTQQQQQQPQTPS
QPPQQPPGHSQHPQGQPASYSQNPPQQQQSPYQRFPPPPQQEISQDSFSSQSSAPPSNQP
KSVSEDVSMQGQPSSLPVSPHPTCAKDLSGSIDDLPTGTDGALSPGVSTSGVSSSQGEQS
NLAQSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPSRPSSVQSD
GSLHPAMSQSPMAQERGFVQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQQNNC
MGGYGPQGGQYGPQGYPRQPGYNNMPNANYPGPGMGNPMNPGPGMGNPINSMSGQGGLPY
AGIPPGRMPAGQMGVRPYGPNMGPNMPPNMSNMPPQVGSGMCPPPGLNRKAQEAAAVVMQ
HAATNSIHSRMPGYPNMSPGMMGSGTPYGPPMNNMPGMMNTQGGPPFPMGPNMANNSSGL
VPSPEFGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKM
WVDRYLGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVSVNKNKKWRELSTNL
NVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPVAGSGS
LQGPQTPQSTSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVALQDPFADSSDPAFPRRN
SMTPNSGYQSGMSTPEMPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASPNSGMAEQQQ
FNRGPPPGAMGNMSMAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQPNLMPVNSDT
GMYSPNRYPPQQQPRNDSYGNQYPGHGTPPGGSYPNQQPGMYPQQQQVMALTHCNYKRPV
EGGYPPAKRHEGEMYSAPFSAGLLQQQQQQPQQQPGVASAPPAGQPEMYQPQYSSGSFTG
TDRRLPGPQGQFPFPFNRERMQAATGPNTQPSMPPQIMQPSTDGPPGGVWQGRGEINYPG
NYPNRQGGPPGGPAQGPGHPGMNRGSEEMSSEQRMNNEGQWGPGQMGPRQPPYGPGGTGP
PMTRTLQSNYQSAQAMQNHIPQVSSPSPMPRGGPMESRTSPSKSPYMHSGIKMQKAGPPV
PASHIVPQSVQSPLIRRDMPFPPGSVEATHPILKPRRCLTTKDIGTPEAWRVMMSLKSGL
LAESTWALDTINVLLYDDNSISTFNLNSLPGLLELVVEYFRRCLIEIFGILREYEVGDPG
QRTLLDPDALKRDWSCMEDEEPGVEDMKVEGEDEEDDDEEEEEVVVQRSKQPAGTTIDGQ
AQVKQEDEQESCSEWDTLKEKDAEDKEKSCSTFEQPSSSSDPPGLGPATPQERPKQASKF
DKLPLKMVRKKDPFPAGRATQRGKVQEFDSGLLHWSAGGGDSTEHIQTHFERREEFLVPR
ERVLVVPTAKRKRPEPEKVGDKDNATPTEKYKQKGERDQRPSQPSSTEKASTTTDGKEGK
SEHSDAETEEMSQSEEPQSQQEHDKSSGPTRQQVPQRVVEDEPHSKDEGPLVTLANWQDA
LARRCVCVSNIVRSLSFVPGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEE
SDDCLGQRDEWWWDCLSLLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSA
EAQDPFPTLGPHSAMSPQRLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGE
RKVAVCREMSVVLLANLAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLH
LQGMHFEPTSNDMMRRAARALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICD
VLFLIGQS
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacaccagcccgccttccgaactaaag
aaaccggatcgagacccacatgaggattctatactgggggaaaagcagcaggaaaacaag
cagccgggattagagcgcggatctccggtccggggggatctgcatgacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccttccagg
actaataataatcagaatgattccattggatccgaggggaataaccatcccgggatggta
caccaccatgggtctggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgccgtcgagtaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcacgtaatacccaggctccggcagctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagcaatggctgcatcttacaacaaccag
agatataatatggggaatccacagccaacgtctaccccaaccctcaaccagctcctaacc
tctccaagctccactcgtatatatccaaattacccatctagtgaatatagtaatcaggaa
ggcgctagtaagggaccaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatagctaagttgagaggccagccg
tacggagggggcagtccatactcccaacaacctggacaggggccacccccaggagcccag
cagggtcacgcatacccgggccaaggctacggtccccttggctcccagagatacccggtg
gtcatgcagggccgcacccctgggactattgggggcatgcagtacgggcagcagatgccg
tcttatgggcagcagggaccaggaggctatgggcctcagggccaagggccctactacggc
caacagggccaggctttacacccaggccagcagcaagggccctacccccaggcacctctg
ggacagcagggtggtcagacaccctaccctcagcagtcccaccctccccagacgtcagcc
tcacatgcccagggtgggccgccctatccgcagccccacatgcccccccagtcccagggc
ccgcagccaggtccatcccaagggcccccgcagtctcagccgccctactcccagggccca
gcccaggctcagtctggtcagcctccttacccccagcagcaggggcctcccagccagcct
ccacagcaggccagctcccaggtcccagcagggtcacagccccagcttagctatccaccc
acgcagggcccacagcagctccccacacagcagcagcagcagcaaccccagacaccctct
caaccccctcagcaaccaccaggtcacagccagcatccacagggccagcctgcatcctac
tcccagaatcctccacagcaacagcagtcaccttaccaacgcttccctcctccaccacag
caggagatatcccaggactcgttcagttcccagtctagcgcccctccctccaaccagccc
aaaagtgtctcagaggacgtcagcatgcaaggccagccgtccagcctaccggtgagtcct
cacccaacctgtgcaaaggatctctcaggctccatcgatgacctgcccacgggcacggat
ggcgctctgagtcctggcgtgagcacttcaggtgtgtcaagcagccagggtgagcagagc
aacctggcccagtcgcccttctcgccccacacctctccccacctgccaggcatccgaggg
ccctcaccgtcacccgccggctcccctgccagtgccaccacctcccgcacggggcccctc
tcacccgccacaatgccagggacccagatgccctctagaccatcgagtgtgcagtctgac
gggagtctgcaccccgccatgagccagtctcccatggcccaggagagagggttcgtacag
agaaacccccagatgcccccatacggttcaccacagtctgcctctcccctgtcaccccga
cagtcctctggaggccagatgcaccctgggatgggaccgtatcagcagcagaacaactgc
atggggggctatggacctcagggtgggcagtatggcccacaaggttacccccggcaacct
ggatacaacaacatgcccaatgccaactaccctggccctggcatgggcaaccccatgaac
cctggccctggcatgggcaaccccataaactccatgtctgggcaaggggggctgccgtac
gcaggcatcccccctggtagaatgcctgcgggccagatgggagtgcgtccctatggccct
aacatggggcccaacatgccacccaatatgagtaacatgccacctcaggtgggctcaggg
atgtgccctccccccggcctcaaccggaaggcccaggaggctgcagctgtagtcatgcaa
cacgctgctaccaactccatacacagcaggatgcctggctaccccaacatgtcccctggc
atgatgggctctggcaccccctatggccctcccatgaacaacatgcctggcatgatgaac
acgcagggcggcccacctttccctatggggcccaacatggccaataactccagtggtttg
gtccccagtccagagtttggtatggatgggaaaatgaaccagggccagaagatgaacaac
aaagtggacggaacaccgaaagcagaaccgactaaatccaagaagtcaagctcttccacg
acgaccaacgagaagatcacgcgtctgtatgagctgggccccgagctggagaggaagatg
tgggtggaccgctacctgggctttatcgaggagaaagccatgggcatgaccaatctgcct
gctgttggccgcaagcccctagacctcttcagactctacgtctcggtcaaggagattgga
ggcttcgcacaggtcagtgtgaacaagaacaagaagtggcgggagctgtccaccaacctg
aacgttggcacgtcgagcagcgctgccagctccctgaagaagcagtacatccagtgtctg
tacgccttcgagtgcaagatcgaacgcggggaggacccccctcctgagatcatcactgac
aacaagaaggccaaccaggccaaggtccagccaccctccccagtagctgggtcaggttct
ctccagggccctcagaccccccagtccaccagcagctccatggccgagggcagcgacctc
aagccccccacacccgcctccaccccacaccccacccagatgccacccggggccaggagc
aatgtggcgctgcaggacccatttgctgacagtagtgaccctgctttccccagaaggaac
tccatgacccctaactctggctaccagtctggcatgagcaccccagagatgccaggtcgc
atgggtccagggccctacgagggtccagggcctaacaaagacccctttggtgccatgcgg
aaagttggggagcagttcttgcctgccagtcctaacagtgggatggctgaacagcaacag
tttaaccgtgggcctcctccaggtgctatggggaacatgtcgatggctcagagacaacag
tacggaccaggaccttacggacaaggctacgaaaggaggccagagcaggggatgggccca
gagggcagcatgggatctggtgctccgcagccaaacctgatgcctgtcaactccgacacg
gggatgtactcgccaaaccgctacccaccacagcagcagccacggaatgattcctatggt
aatcaatatcctggccatggtactccccctggtggttcctatcccaatcaacagccagga
atgtacccacagcaacaacaggtgatggctctaacccactgtaactacaagcgtcccgtg
gaagggggctacccaccagcgaagcgtcacgagggggagatgtacagtgcccccttcagt
gcagggctgctgcagcagcagcaacaacaaccgcagcagcagccaggggtggcctctgca
ccccctgctggccagccagagatgtaccaaccccagtacagcagcggctccttcaccggc
actgaccgccgcctgcctggtccccagggccagttccccttccccttcaacagagagcgc
atgcaggccgccacggggcccaacacccagccctccatgccccctcagattatgcagcca
agcactgacggacccccgggtggcgtgtggcagggccgcggggagattaactatcccggc
aactaccccaaccggcagggtggccccccagggggcccagcccagggacctggccacccc
ggcatgaaccgcggttcggaggaaatgtcatcagagcagcgcatgaacaacgagggccaa
tgggggccaggtcagatgggccctcggcagcccccctacggccctggagggacgggcccg
cccatgacccgcaccctacagtccaactaccaatccgctcaggccatgcagaaccacatt
ccacaggtgtccagtccttcccccatgccccgcgggggccccatggagagccggacgtcg
cccagtaaatctccctacatgcacagtggcatcaagatgcaaaaggcagggcccccggtt
cctgcctctcacatagtgccccagtctgtgcagtcccctctgatccgtagagacatgccc
tttcccccaggctcagtggaggccacccaccccatcctaaaaccacgccgatgcctcaca
acgaaagatatcgggaccccagaggcttggagggtgatgatgtccctaaagtctggcctg
ttggctgagagcacgtgggccctcgacaccatcaacgtcctcctgtatgacgacaacagc
atctccaccttcaacctcaattcgctgcctggcctgctggagctggtggtggagtacttc
cggcgctgcctcatcgagatctttgggatcttgcgcgagtacgaggtgggcgatcccggc
cagaggactctactggaccctgacgccctgaaaagagactggagctgcatggaagatgag
gaaccaggggtggaggacatgaaggtagaaggagaggatgaggaggatgatgatgaggag
gaagaagaggtggtggtgcagcgttcaaaacagccggccgggacgacaattgatggacag
gctcaggtgaagcaagaggatgagcaagagtcgtgctcagaatgggacactctgaaagag
aaggatgctgaagataaggagaagagctgctctacctttgagcagcccagctcttcatcg
gacccccctggcctgggcccggctaccccccaggagagacccaaacaggctagcaagttc
gacaagctccccctgaagatggtacggaagaaggacccgtttccagcaggcagggcaacc
cagagaggaaaagtgcaggagtttgacagtgggctgctccactggagtgccggcggcgga
gacagcacggaacacatccagacccactttgagaggagggaggaattcctggtcccacga
gaacgagtgctggtcgtccccacagccaagaggaaaaggccagaaccagagaaggtgggg
gacaaggacaatgctacccccacagagaaatacaaacagaagggggagagggatcagagg
ccctcccagccatcatccacagagaaggcctcaacaacaaccgacggtaaggaggggaag
tccgagcactcggacgctgagacagaggaaatgtcacagtccgaagagccccagagccag
caggagcacgacaaatcgagcggacccactcgtcagcaagtcccccagcgtgtggtggag
gacgagcctcacagcaaggacgagggcccactggttacactggccaactggcaggatgct
ctggcccgccgctgtgtctgcgtctccaacatcgtgcgcagcctctcctttgtgcctggc
aacgaccaggagatgtccaaacaccctggcctcatgctgctgctgggtcgcctagtgctg
ctgcaccaccgccaccctgagaggaaacaggccccgctcacctacgagaaggaggaagag
tctgatgactgtcttggccagagggacgaatggtggtgggactgcctgtcactgttgagg
gagaactgcctggtcactctggccaacatctctggccagctggacctctccatctacccc
gagagcatctgccttcctctgctggacggcctcctccactgggctgtgtgcccctcggct
gaggcccaggaccccttccccacgttggggccacacagcgcaatgtccccccagagactg
gtcttggagaccctcagcaagctgagcatccaagacaacaatgtggacctggtcctggcc
acgccgccgttgggtcgtttagagaagctgtatgggaccttggtgcggctggttggggag
agaaaggtggccgtctgcagggagatgtcggtggtgttgttggccaacctggcccaggga
gacagcatggcagcgcgcgccattgccgtgcagaagggaagcgtgggaaacctcctgggc
ttcttggaagacagcctggcggccacccagctacagcagagccagagctctctgctgcac
ctgcaggggatgcactttgagcccaccagtaatgacatgatgcggcgggcggcccgggcc
ctgcacgccttggccaaggtggaggagaaccactcagagttcacactctacgagtcacgc
ctcctcgacctctccgtgtcacctctcatgaactctgtggtgtctcacgtcatctgcgat
gtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
