Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139396272
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Entry
139396272 CDS
T10872
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139396272
04518 Integrin signaling
139396272
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139396272
09142 Cell motility
04820 Cytoskeleton in muscle cells
139396272
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139396272
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139396272
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139396272
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139396272
Hyaluronan
Extracellular matrix or blood plasma proteins
139396272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
fn3
fn3_2
Motif
Other DBs
NCBI-GeneID:
139396272
NCBI-ProteinID:
XP_070999493
LinkDB
All DBs
Position
3:complement(47219156..47255602)
Genome browser
AA seq
2017 aa
AA seq
DB search
MRDFVQRVVETLGVDENKDRVAVVQYSRDPAAQFYLNTYTTKVEILNTVRGLRHKGGRPL
NTGAALQYVRDNVLTASSGSRRTEGVPQLLILLSGGRSFDNVDTPASALKELGVLIFGIG
TRSSDSRELQRISHDSSYALSVSDFTDLPNIQQQLLSSVESVVIDVTPESTTDLVTTTVV
FTGGEKRDVVFLIDGTTAVRSEFPAIRDMIGRVVEKLDVGLDRVRVSVVQYSDGATVEFL
LNEHSTKDEVRQATRKLQSSGGNRRNTGRALEWISKNIYQKSAGSRIEEGVPQFLILVTG
GKSNDDVSGPVNQLKTNLVAPLAIGTKNADPNELRQIALKPELAYSINNFGQLPTVEQQL
IASVNTMTTTDISGSFVPSVLDIANLNMGRKDIIFLIDGSDTTGSNGIVHIRDFILNIVQ
QLDVQLDQVRVAVVQYSDKVKTEFSLNSHNKKTAVLSAIKRLRQQGGRSSDLANAIEYVT
RNELKASAGVRLAQASQHLVVLTGGRSPTDVSVYGPLLKGSRVNCIGIGAGGADSRQLNQ
IATSSADVLQVPAFPGLPVIKERFIARLNGTMPDEAPPDFVVPTKVADIVFLVDGSINLG
KDNFKEVMGFIQNLIDLFFTERDNLQIGLASYTTDVTDVFYLNTYKNKDDIIDAISRTEY
KGGRRINTGTAIHHVQENHFIKDKGSRKDEGIAQILMIITGGRSADDSKTAALALKATGV
RIYAVGVGDIEDELNNLASEASTVARASTFVELSELNEQILETLDDEVKGIKLCTGVSQE
PSKTCSLEVLVGFDVSSPNIFQAQRILESKMGAILQRITKMTGISCSSGQIPLIQVGILA
MDAASEPVHLEFTDNADMLFEAFRALRARGPYFLNAKTIAAYGSRFKSRAADAVKVVIHL
TDGLDGQYNEMKRQVEELKISGVNSFILVGLERVPRFEEAVLLEFGRGFRYTRPLRVNVM
DLDYELLEELDNIAERECCAVPCKCTGRRGDRGAVGLGGLKGGPGGAGGAGHPGDEGGSG
DRGPPGVNGTQGFQGCPGQRGIKGGRGYSGEKGEFGEIGLDGINGEEGKSGVAGPPGDRG
NPGRRGPKGTKGHEGDIGDTGIRGDPGTTGRDNNVAGPKGDPGDVGPVGEPGDDGKMGGP
GEPGRTGSDGRRGPPGQAGDPGKPGGNGVQGEPGIGGSRGQAGPIGAPGTRGEDGNPGPR
GPGGAQGPPGNNGRRGPLGRKGEPGEPGPKGIVGPLGPRGEPGEDGRDGFGIAGPKGRKG
DEGFPGFPGPKGAAGDGGTNGGPGPIGNRGQRGVSGEIGTPGQKGEVGYPGPYGQKGPRG
PGVVQCDLVKKIRDNCPCCYGQQECPLYPTELAFALDTSESVGRPAFNNMRDTVLRLVGN
ITIAESNCPRGARVALTLYNNEVTTEIRFADGLKRRTLVQRVEGLQALQTRKQRSLETAM
NFLAQNTFKRVRSGFLMRKVAIFFVNGPVKDQRAVSAAALRLYDSGIASVFLTNKEDGQL
TRALKMNSTGSALGQVIVLPNPGSAQYISAIQKVMNCHICLDSCAPDQMCDYAPPQQSRD
RRASTTDVDIDMAFVMDSSETTYPTVFTEMKRYVAHIVEQLEVSSDPVASIHHARVAVIQ
HAPYEFLRNSSGSPILVDVGLTDHRSAQDIRNFLLEKTPQLEGGRALAVAIEHTVEQVFE
KAPHQRDLKVLMLFVTGPVEQDEERLVAVATEAKCKGYFLVILGVGEKLGAGDTRVLTRM
ASEPSDVFFKRLTSTTHFYDMHIQNFGRLLPKYLSIENVFYMSPEVSKNCHWYQSDQPFP
KFPFSKSHHSQEKHQKHENHQAVHPRKHNDQDSDELHVANVTSSSLTLRWASPDPKYMAY
FKVVVTRLRDNTLVLRRNVTGTELTVGGLESAQTYHAVVTMHTAQGHVAATHKGIITTKA
AAEHKVTAPMEVTGIMATTPLDKPEIAEPQQQVEQQPEMEILPAIAPPRGQKAWDWLDES
RANSGRRSQRRVRIKGKRRKGSLGAPVNQGVIAAIKT
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atgcgggactttgttcaaagagtagtggagacactcggtgtggatgagaacaaagatcgc
gtggctgtggtccagtacagtagagatccagccgcccaattctatctgaacacatacaca
acaaaagtagagattctcaacactgtacgaggtctgagacacaaaggtgggagacctctc
aacactggagcagctctccagtacgtgagagacaatgtcttgactgcctcctccggaagt
cgacgcactgaaggtgttccacagttactgattctgctgagtggtggaaggtcctttgac
aatgttgacactccagcttctgctctgaaggagcttggggtcttgatctttggaattgga
acaaggagctctgatagcagagaattgcagaggatatcacatgattccagttacgctctg
tctgtctctgacttcactgaccttccaaacatccagcagcaacttctgtcctcggtggag
tcagttgttattgacgttacgccagaatcgacaacagatttagtcaccacaaccgtagta
ttcactggcggagaaaagagggacgtggttttcctcattgacggcacaacagcggtgcgc
agcgagttccctgccatccgtgacatgattgggagggtcgtggaaaagctggacgtgggt
ctggatcgggtgagggtgtcagtggtgcagtacagcgacggtgccacggtggagttcctc
ttgaacgagcactccaccaaagacgaggtccgccaggccacgaggaagcttcagagcagc
ggtgggaaccgtcggaacactggtcgtgcccttgaatggatctccaagaacatctaccag
aaatcagcaggtagccgcattgaggagggagttcctcagttcctgattctagtcacaggg
ggaaagtccaacgatgacgtctctggaccggttaatcagctgaagaccaacctggttgcc
cctttagccatcggcacaaagaatgccgaccccaatgaactgaggcagatcgccctaaag
ccagaacttgcctactccattaacaacttcgggcagcttccaacagtggagcagcagctt
attgcttcagtcaacaccatgaccaccactgacatctccggcagttttgttccctcagtt
ttggatattgctaacctcaacatggggcggaaagatatcatctttctcatcgatggctcg
gacaccacaggctccaatggcattgtccacatccgtgacttcatcctcaacatcgttcag
caactagatgtgcaacttgaccaggtccgggtcgctgtcgtccaatattccgacaaggtc
aagaccgagttctctctcaactcccacaacaaaaaaacagctgtgctctcagccatcaaa
agactacgccagcagggtggaagatcatccgatcttgccaacgccatcgagtatgtgacc
aggaatgagctgaaagcctcggcgggtgtccggcttgcgcaggcctcccagcatctagtg
gtccttaccggcggaaggtcccccactgacgtgtccgtgtacggccctctgcttaaaggc
tcccgggttaactgcatcggcatcggcgctggtggagcagactccaggcagctcaaccag
attgccaccagctctgcagatgttctccaggtacccgctttccccggcttgcctgtcatt
aaggagaggtttattgccaggctgaacggaacaatgcctgatgaggcaccaccagatttt
gtcgtcccaaccaaggttgctgatattgtattcttggtggacggctccatcaacctgggc
aaggacaacttcaaggaggtgatggggttcatccagaacctcatcgacctcttctttact
gagcgtgacaacctgcagattggcctggcgagctacaccaccgacgtcaccgacgtgttc
tacctcaacacctacaagaacaaggacgacataatcgatgccatcagccgcaccgagtac
aagggaggccgcaggatcaatacaggcaccgccatccaccacgtacaggagaaccacttc
atcaaagataaaggcagcaggaaggatgagggaatcgcccagatcctgatgatcatcacc
ggcggaaggtcggccgacgacagcaagaccgcagctctggcgttaaaggccaccggcgtg
cgcatctacgctgtcggcgtgggtgacattgaggatgagttgaacaacctggcgagtgag
gcctccacagtggccagggcaagcacgtttgtggagctctctgagctcaacgagcaaatc
cttgagacattggatgatgaggtgaagggaatcaagctctgcactggcgtgagccaggag
ccctcaaaaacctgcagtctggaggtgttggtaggctttgatgtgtcctcaccaaacatc
ttccaggcccagaggatcctggagtccaagatgggtgccatcctccaaaggatcaccaag
atgacgggcatcagttgctcatcgggccagatcccattgatccaggtgggcatcctggcc
atggatgccgcctcagaacccgtccacctggagttcacggacaacgccgacatgctgttc
gaggcattccgagcactgcgcgcccgcggaccctactttctcaatgccaagaccattgcc
gcatatgggtccaggttcaaaagccgagcagcagatgcggtcaaggttgtgatccatctg
actgatggtctggatggccagtataatgaaatgaagagacaggttgaagaacttaagatt
tcaggtgtgaacagctttatcctggtgggtctggagcgggtacccaggtttgaggaggcc
gtgctcctggagtttggccgcggcttcaggtacaccagacccctcagagttaatgtcatg
gacttggactacgagcttctggaggaactggacaacattgctgagagggagtgttgcgcg
gtgccatgcaaatgcaccggcagaaggggagacagaggagcagtcggacttggaggactg
aagggtggtccaggcggagcaggtggagcaggacatcccggagatgagggtggatccgga
gacagaggtcctcctggtgtcaacggaactcaaggtttccagggatgtcctggacagagg
ggcatcaagggtggtcgtgggtactctggagaaaagggtgaatttggagagattggcctg
gatggcatcaatggagaagagggcaagagtggagtcgctggacccccaggagacagagga
aaccctgggagaaggggacccaaaggaactaaaggacatgaaggagacattggggatacc
ggaatccgaggagatcctggaaccacagggcgagataacaacgtggctggacctaaagga
gacccaggcgatgtcggcccagtgggagagccaggggacgatggtaagatgggaggcccc
ggtgaaccaggcaggacgggttctgatggtagaagaggcccacccggacaagctggagac
cctggcaaacccggaggtaacggtgtgcagggagagccaggtatcggaggatccaggggc
caagctggaccaattggtgcacctggtaccagaggtgaggacgggaaccctggaccaagg
ggcccaggaggagcccagggaccccccggaaacaatggcaggagaggacctcttggtcgc
aagggtgagccaggagagcccggacccaaaggcatcgtgggacctctgggacctcgtggt
gaacctggcgaagatggtcgagatggatttggaatcgcagggcccaaaggaagaaagggt
gatgagggcttcccaggattcccaggaccaaagggagcggcaggtgatggcggaaccaat
ggcggaccaggacccataggaaaccgtggccagaggggtgtttcaggagaaattggtact
ccaggacagaagggagaggttggatacccgggaccttatggccagaaaggaccgagagga
cctggcgttgtgcaatgtgacttggtgaagaaaatcagagacaactgtccttgctgctat
gggcagcaggagtgcccactctaccctaccgagctggccttcgcactggacacctccgaa
agcgtgggtaggcctgccttcaacaacatgcgtgacaccgtgctccgcctggttggcaac
atcaccattgccgagagcaactgcccccgcggtgcccgagtggccctcaccctctacaac
aatgaagtgaccaccgaaatccgctttgcagacgggctgaagcggcgcacactggtgcag
cgtgtggagggcctccaggcattacagacacgcaaacagcgtagcctggagacggccatg
aacttcctggcgcagaacaccttcaagagggtgcgcagtggcttcctcatgaggaaggtg
gccatcttctttgttaatgggccagtgaaggatcagcgggcggtaagcgcagccgcccta
cgcctctatgactccggcatcgcctcagtgttcctgaccaataaagaggatggccagctc
accagagctctgaagatgaacagcactgggtcagcactgggtcaggtgattgtgctgccc
aatcccggaagtgcacagtacatctcagctatccaaaaggtcatgaactgccacatctgc
ctggactcctgcgccccggaccaaatgtgtgactatgccccccctcagcagtcaagagac
aggagggcctccaccaccgatgtggacattgacatggcctttgtcatggatagctccgag
accacctaccccaccgtcttcactgagatgaaacgctacgttgcacacatcgtagagcag
ctggaagtctcgtcggaccccgtggcatccatccaccacgcccgcgtggccgtaatccag
catgctccctacgagttcctgcgcaacagcagcggctcacccatccttgtggatgtgggc
ctgactgaccaccgctcggcccaggacatccgcaacttcctacttgagaagacgccccaa
ctggagggtgggcgggcgctggcagtggccatcgagcacacggtggagcaggtgtttgag
aaagcaccccaccagcgagacctcaaggttctgatgttgtttgtgacaggccctgtggag
caggatgaggagcggctggttgctgtggccacagaggccaagtgtaagggctatttcttg
gtcatcctgggtgtgggtgagaagctgggtgctggggacacccgcgtgctgacgcgcatg
gccagcgagccatccgacgtcttcttcaagaggctgaccagcaccacgcacttctacgac
atgcacattcagaactttggccgactgctgcccaagtatctcagcattgagaacgttttc
tacatgtcccctgaagtctccaaaaactgtcactggtaccagagtgaccagccattcccc
aagttccccttctccaagtcacaccacagccaagagaaacatcaaaaacacgaaaaccac
caggcagtccatccaagaaagcacaacgaccaagactcagacgagttgcacgtagccaac
gtcacttccagcagcctgaccctgcgctgggccagcccggaccccaagtacatggcctac
tttaaggtggtggtgacgcgcctgcgtgacaacacactggtgttgaggagaaatgtgacg
ggcacggagctcactgttggcggcctggagagcgcccagacctaccacgccgtggtgacc
atgcacaccgcccaaggccatgttgcggccacccacaaaggcattattaccaccaaagca
gcagcagagcataaggtcactgcccccatggaggtgacaggtatcatggccactacacca
ctggacaaaccagagattgcagagcctcagcaacaagtggagcagcagcccgagatggag
atccttccagctattgctccgcctcgagggcagaaggcatgggattggttggatgaaagc
cgtgcaaacagcgggcggcgctcacagcgacgagtgagaataaaaggaaagagaagaaaa
ggctccctaggtgcacctgtcaaccaaggagtcattgccgcaataaaaacgtag
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integrated database retrieval system
