Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139396523
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Entry
139396523 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DDX18-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139396523
03009 Ribosome biogenesis [BR:
ocla03009
]
139396523
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139396523
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139396523
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
90S particles
Helicases
139396523
Pre-60S particles
139396523
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
BUD22
AAA_22
Motif
Other DBs
NCBI-GeneID:
139396523
NCBI-ProteinID:
XP_070999626
LinkDB
All DBs
Position
3:48804952..48817799
Genome browser
AA seq
690 aa
AA seq
DB search
MADLQMRLLRQKIQKRSEKNKERKLLNKQKQEEDNGDANRLPEERCDETSHGATAISKPQ
NAKPTKKPQIQKNVSAEVNTEEKSVKMKRKLKTAQSPGVKKAKKDEADDDEEDMEEERGL
TVTEEDADQGTEKPTQPLEGAEAGEEEEDDDDDDDDEEEDEEGSEDEAEKGEGEKFGDEE
DGPELPTGLTGAFEDTSFASLTSLVSENTLKGVKEMGFDHMTEIQHKSIRPLLEGRDILA
AAKTGSGKTLAFLIPSIELIYKLKFMPRNGTGVVILSPTRELAMQTYGVMKELMTHHVHT
FGLIMGGSNRTAEAQRLANGVNILVATPGRLLDHLQNTAGFMYKNLQCLIIDEADRILEV
GFEEELKQIIKLLPKRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDNATVDGLE
QGYVVCPSEKRFMLLFTFLKKNRKKKLMVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQ
TKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGIN
GIGHALLILRPEELGFLRFLKQAKVPLSEFEFSWAKISDIQGQLGKLIEKNYYLHKSAQE
AYKSYVRAYDSHSLKAIYSVNTLNLPMVALSFGFKVPPYVDLNVHSKGGLKMTKRGGGGG
FGYQKGKGAHKAKIFKHVNKGKGDKRQFSR
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcttcagatgaggcttcttcggcagaaaatccagaaaagaagcgaaaagaac
aaagagcgaaagctacttaataaacagaaacaagaggaagataatggtgacgcaaacaga
cttccagaggagcgttgtgatgaaacgagtcacggggccacagcaatttcaaagccacag
aatgccaaacccacaaagaagccacaaatacagaagaatgtgtctgcagaggtgaacaca
gaagaaaaatctgtcaagatgaaaaggaagctcaaaactgctcaatcgccaggtgtgaaa
aaagccaagaaggatgaggcagatgatgatgaggaggatatggaggaggagagggggttg
actgtgactgaggaggatgctgatcagggcacagaaaaacccacacagcctcttgaaggg
gcagaggctggagaggaggaggaagatgatgatgatgatgatgatgacgaggaggaggat
gaagagggaagtgaagatgaggcggaaaagggggaaggagagaagtttggggatgaggaa
gatggacctgagctcccaactggcttgacaggtgcgtttgaggacacatcgtttgcctct
ttaacctctctggtgagcgagaacactctaaagggtgtgaaggagatgggctttgaccac
atgaccgagatccaacacaaaagcatccgccccctactggagggaagggatatcctggct
gctgctaagaccggcagtggtaaaaccctggccttcctcatcccctccatcgagctcatc
tacaaactcaagttcatgcccaggaacggcacgggcgtggtgatcctgtccccaacgcgc
gagttggccatgcagacgtatggtgtgatgaaagagctgatgacccaccacgtgcacacc
tttggcctgattatgggcggcagcaaccgcacggccgaggcccaaaggttggccaacggt
gtcaacatcctggtggccacacccggcagactgctggaccacctgcagaatactgctggc
ttcatgtataagaacctccagtgtctgatcattgacgaagccgaccgtatcctggaggtc
ggcttcgaggaggaactgaagcagatcatcaaactcctgccaaagcggaggcagaccatg
ctgttctcggccacccagacccgtaaggtggaggacctggcccgtatctccctgaagaag
gagcccctctacgtgggcgtggacgacaacaaggacaacgccaccgtggatggccttgaa
cagggctatgtggtgtgtccgtctgagaagcgcttcatgctactcttcaccttcttgaag
aagaaccgtaagaagaagctgatggtgttcttctcctcctgcatgtcggtcaagttccac
tacgagctgctcaactacattgacctgcccgtcatggccatccacgggaagcaaaagcag
acgaagcgtaccaccaccttcttccagttctgtaacgctgactctggcatcctgttgtgt
accgacgtggcggccagaggcctggacatccccgaggtggactggatcgtacagtatgac
cccccagatgaccccaaggaatacatccacagggtcggcagaacagctcgtgggatcaac
ggcataggccacgccctcctgatcctacggccagaggagttgggcttcctgcgcttcctc
aaacaggccaaggttcctttgagtgagtttgaattctcttgggcgaagatctccgatatc
cagggtcagctggggaaattgattgagaagaactactacctgcacaagtcagcccaggag
gcctacaagtcctacgtgcgggcgtacgactctcattcactcaaagcgatctacagcgtc
aacacgctcaacctccccatggtggcgctctccttcggcttcaaagtgcccccctacgtc
gacctcaacgtccacagcaaaggaggactgaagatgacgaagaggggtgggggcggcggc
ttcggctaccagaagggcaagggcgctcacaaagccaagatcttcaagcacgtcaacaaa
ggcaagggggacaagaggcaattctctcgctag
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