Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139396614
Help
Entry
139396614 CDS
T10872
Name
(RefSeq) integrin beta-2-like
KO
K06464
integrin beta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
ocla04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139396614
04517 IgSF CAM signaling
139396614
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139396614
09142 Cell motility
04810 Regulation of actin cytoskeleton
139396614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139396614
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139396614
04515 Cell adhesion molecules [BR:
ocla04515
]
139396614
04090 CD molecules [BR:
ocla04090
]
139396614
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
139396614
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139396614
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139396614
CD molecules [BR:
ocla04090
]
Proteins
139396614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
PSI_integrin
EGF_integrin
vWA_SIBA-E
EGF_2
I-EGF_1
Motif
Other DBs
NCBI-GeneID:
139396614
NCBI-ProteinID:
XP_070999676
LinkDB
All DBs
Position
3:49886341..49910133
Genome browser
AA seq
777 aa
AA seq
DB search
MYKCVSLLLLLMGRGVLSQEVEVCSKTVINSCRDCIRSGAYCTWCKQLNFTKPGEQEAAR
CDTRAQLEERGCMGKDIVSPLNILTVTKNTALSTNAFVKDEPIQLRPQEVNLKLRPGLPR
TFKLDFRRVEGYPVDLYYLMDLSYSMEDDLRSIKTLGNELFKALQGITKQGRIGFGSFVD
KTVLPFTNTNPEKLKKPCEEKELFCQPAFGYRHVLSMTENKADFNREVDKQRISGNLDSP
EGTLDAIMQAAVCGDRIGWRNSSTRLIVLTTDDGFHMAGDGKLAGILEPNDERCYMDNKL
YTKSNDMDYPSVGQVASQLEKNNIQPIFAVTKNMENVYRELSRMIPKSEVGVLSEDSKNV
VELIQAAYNRLSSKVTVTHDALPDNVRVTYTPLCPGGGPAGDKGVCDNVKVGDLVSFNVT
VTADECIDRERSFLIGPLGIKDKLKVSLSTRCECECDDPKEENHKDCDGKGKVKCGMCSC
NAGFVGQKCECAIGEKDESSLRAACRKDNGTECEGRGDCVCGICQCYAQQGGSTYYGTHC
ECENESCEKFQNKLCGGNGKCRCKICECNPEYEGTACQCKKSDEQCRTPSGSVCSGRGTC
QCNQCKCIEGYQRPYCLTCPACQTPCITKGKCIECLGFQTGPFSKNCSQTCKSINEFEMV
ETLPPGKPCDVRDVENCRVFFIIKQLDGEDNYSAQILKTRECPELPNIYAIIGGSIAGVA
LIGLLILLIIKAILYMRDVKEFRRFENEQKKGKWSPGDNPLFMNATTTVANPTFTGE
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgtataagtgtgtgtctctcctactcctgctgatgggcagaggagttctctcccaggaa
gtggaagtatgttccaaaacggtgatcaactcctgcagggactgcatcagatcaggagcg
tactgcacgtggtgtaaacaactgaacttcaccaagccaggtgagcaagaagcagctcgc
tgtgacacccgggctcagctagaagagaggggctgcatgggaaaagacattgtatcccca
ctgaatatccttactgtgactaagaacaccgccctgtccacaaatgcatttgtcaaggac
gaacccatccagctgcgtcctcaggaggtcaatctgaagctcagaccagggctgcctcgg
acgttcaagctggactttcggagagtggagggctatcctgttgatctctactacttgatg
gatctctcctactccatggaggacgatctgaggagcatcaagactctgggaaacgagctc
tttaaagctctgcaaggaatcacaaaacaagggcgaataggcttcggctctttcgtagac
aagactgtcctgcctttcactaacaccaacccagaaaagctgaagaagccatgcgaagaa
aaggagctgttctgtcaacctgcctttggctacaggcatgttcttagcatgacagagaac
aaagctgactttaatagggaggtagacaagcagcgtatctctgggaacttggactcccct
gaagggacgctggacgccatcatgcaggctgcagtatgtggggacaggattggctggagg
aatagcagcactcggctaatcgtcctgaccaccgacgatggcttccacatggcaggggat
ggcaagctggctggcatactggagcccaacgacgagagatgttacatggacaacaagctg
tacactaagagcaatgacatggactacccatctgttggtcaagtggcttcgcagttagag
aagaacaacattcagccaatctttgctgtgacaaagaacatggagaatgtatacagggaa
ctcagtagaatgatccccaagtctgaggtgggagtattgtcagaggactccaaaaatgtt
gttgaattgatccaagctgcctacaataggctctcctccaaagtgacagtgactcatgat
gctctccctgacaatgtgagagtcacttacactccactctgtcctggagggggacccgca
ggggacaagggggtctgtgataacgtcaaagtaggagacttggtgtctttcaacgtaaca
gtgacggcagatgaatgtatagacagggagaggtcttttctgattggcccattgggcata
aaagacaagctgaaggtgagcttgtcgactcgctgcgagtgtgaatgtgatgaccccaag
gaggagaatcacaaggactgcgacgggaagggtaaagtcaaatgtggcatgtgcagttgc
aatgccggcttcgtgggtcagaagtgcgagtgcgccatcggggagaaggacgagagctct
ctgagggcggcatgccggaaggacaacggcacggagtgcgaaggacgaggggactgtgtg
tgtggcatttgccagtgctatgcccaacaaggcggcagcacctactacggcacgcactgc
gagtgtgaaaacgagagctgcgagaagtttcagaacaaactgtgtggagggaacgggaaa
tgccgttgtaaaatttgcgaatgcaaccccgagtacgaaggcaccgcctgccaatgcaag
aagtcggatgagcagtgtcgtacaccaagcgggagcgtgtgcagcggcaggggcacatgc
cagtgtaaccagtgcaagtgtatcgagggctaccagcggccctactgtctgacctgtccc
gcctgccagactccctgtataaccaaggggaagtgcatcgagtgtctgggctttcagaca
ggcccgttcagcaagaactgctcccagacctgtaagagtattaatgaatttgagatggtg
gagacattgccacctggtaagccttgtgacgtgagggatgtggagaactgccgggtgttc
tttatcattaaacagttggatggagaggacaactactccgcccagatactaaagaccaga
gaatgtccggagttgccaaacatctacgccatcattggaggctccattgcgggcgtggcc
ctgatcggcttactgatcctgctcatcatcaaagccatcctctacatgagagacgtgaag
gagttccgcaggtttgagaatgagcagaagaaaggaaagtggtccccgggagacaatcca
ctattcatgaacgcgaccaccaccgtggctaaccctaccttcactggagaataa
DBGET
integrated database retrieval system
