KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139397116
Entry
139397116         CDS       T10872                                 
Name
(RefSeq) histone-binding protein RBBP7
  KO
K10752  histone-binding protein RBBP4
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082  ATP-dependent chromatin remodeling
ocla03083  Polycomb repressive complex
ocla04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    139397116
   03083 Polycomb repressive complex
    139397116
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    139397116
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ocla03036]
    139397116
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     139397116
  Histone modification proteins
   HAT complexes
    HATB complex
     139397116
   HDAC complexes
    Sin3A-HDAC complex
     139397116
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     139397116
    PRC2.2
     139397116
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     139397116
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    139397116
  Chromatin remodeling factors
   NuRD complex
    139397116
   NuRF complex
    139397116
   NuRF complex (fruit fly)
    139397116
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_DCAF12 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 ANAPC4_WD40 Beta-prop_RIG_1st eIF2A WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_IFT140_1st MIOS_WD40 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 139397116
NCBI-ProteinID: XP_071000085
LinkDB
Position
Unknown
AA seq 426 aa
MADKEVYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVNRPDGKDY
AVHRLVLGTHTSDEQNHLVIASVQVPNDDAQFDASHYDSEKGAEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEG
YGLSWNPNLSGNLLSASDDHTICLWDIGAGPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFIHGGHTAKISDFTWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPDTPASE
LEGQGS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcggataaagaagtgtacgacgatgcagttgaggagcgggtgatcaatgaagaatac
aaaatctggaagaagaatactcctttcctctatgacctggtgatgacccacgcgctggag
tggcccagtctcactgtgcagtggctacctgacgtcaacaggccggatggaaaggactat
gcggtccacagactggtactgggaactcacacgtcagatgagcagaatcacctggtgatc
gccagcgtacaggtccccaacgatgacgcccagtttgatgcttctcactacgacagtgaa
aaaggagcagaatttggaggttttggatcagtgagtggaaagatagagattgagatcaag
ataaaccatgaaggtgaagtgaaccgggccaggtacatgcctcagaacccctgcatcatt
gctaccaagacccccacctcagacgtactggtctttgactacaccaagcacccttccaaa
ccagatcccagtggtgagtgcagcccagacctgcgcctgcggggccaccagaaggagggc
tacggcctgtcctggaaccccaacctcagtggcaacctgctcagtgcttctgatgaccac
acgatctgcctgtgggacatcggtgctggtcctaaggaggggaagatagtggatgctaag
accatcttcaccggtcacactgcagtggtggaggacgtgtcctggcacctgctccacgaa
tcactgtttggctctgtggccgacgaccagaaactgatgatctgggacacacggtccaac
aacacatccaagcccagccatgcagtggacgcccacactgcagaggtcaactgtctgtcc
ttcaacccctacagcgagttcatcctggccaccggctctgcagacaagactgttgctctc
tgggatctgcgtaacctcaaactgaagctccactcgtttgaatcgcacaaggatgaaatc
ttccaggtgcaatggtcccctcacaacgaaaccattctggcttccagcggaacagataga
aggctgaacgtatgggatctcagtaaaatcggagaggaacagtctgctgaagatgcagag
gacggacctccagaactcctgttcatccatggaggacacacagcaaagatttctgatttc
acatggaaccccaacgagccatgggtcatctgctccgtctccgaggataacatcatgcag
gtttggcaaatggctgagaacatctataatgatgaggagcctgacacccctgcttcagag
ctggagggtcaagggtcgtaa

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