Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139397144
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Entry
139397144 CDS
T10872
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139397144
03036 Chromosome and associated proteins [BR:
ocla03036
]
139397144
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
139397144
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139397144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
139397144
NCBI-ProteinID:
XP_071000150
LinkDB
All DBs
Position
1:complement(26920670..26927813)
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AA seq
812 aa
AA seq
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MVMSSHYIARLVLGWLSQVLPMDGGPTDVVVEAKDSITYEGEEVVADLLQQAAEGVMDQQ
PVGEGGLDPQELVDGVNVEMMVMDSLDPALLQMKTEVMDAPVISAHEATVTTVDETQIIT
LQVVNLEEQQLGGLGELQLVQVPVSAVPVTQATVEELQGTFVDATAMPKDGNPMICHTLP
LPEGFQVVKVGANGEVETVEQDELQHQEEQQVQPEEEEEEEELHCETQPDDPQWTTDPDY
QPPAKKTAKKAKKSKLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKP
TKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLN
THTGTRPHKCQDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHT
GERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENV
AKFHCPHCDTVIARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKR
FKCDQCDYCCRQERHMLMHRRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPNFVPTA
FVCTKCGKTFTRRNTMARHAENCNGDPTEGENGTPPKRGRGGRKRKMRSRKDDDDDDDDS
EDNADPELDDIDEEDEDAEEALLEEEEEEMELEQAPPTKPIPAPVEPPVKRKRGRPPKNA
PKPASPAKASKAAPKGKAAAAAAIIQVEDENTGVIENIIVKNEPEAEQAAIEVVVEQSEE
AEAGVETVELPVAEAAPNGDLTPEMILSMMDR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggttatgagttcacattacattgctagattggttttgggttggctctctcaggtatta
ccgatggacggcggaccaaccgatgttgtggttgaggccaaggacagcatcacctatgag
ggggaggaggtggtggcagacctgctccagcaagcagcagagggggtaatggaccagcag
cctgtgggagaggggggcctggatccccaggagctggtggatggagtcaatgtggagatg
atggtaatggattccctggaccctgccctgctgcagatgaagactgaggtgatggacgcc
cctgtgatctcagcccacgaggccacggtcaccacagtggatgagacccagatcatcact
ctgcaggttgtcaatttggaggagcagcagcttggaggccttggggagctacagctggtc
caggtgcctgtctctgctgtgcctgtaacgcaggccactgtagaggagctacagggcacc
ttcgtggacgccacggccatgcccaaagatggaaaccctatgatctgccacaccctgccc
ctgccagagggcttccaggtggtgaaggtgggtgcgaatggtgaggtggagacggtggag
caggatgagctccagcaccaggaggagcagcaggtccagcctgaggaggaggaggaggag
gaggagctgcactgcgagacccagcctgacgacccacagtggaccacagacccagactac
caacccccggccaagaagactgccaagaaagcaaagaagagcaagctgcgctacaacact
gagggggacaaagacaacatggacgtgtctgtctatgactttgaggaggagcagcaggag
gggatgctctctgaggtcaacgcagagaaggtggtgggcaacatgaagccccccaaaccc
accaagatcaagaagaagggtgtgaagaaaacattccagtgtgagctgtgtagctacacc
tgtccccgccgctccaacctggaccgacacatgaagagccacacggacgagaggccacac
aagtgccatctgtgtggaagggccttcaggactgttaccctgctgaggaaccacctcaac
acacacacaggtaccagaccacacaagtgtcaagattgtgacatggcctttgtgaccagt
ggagagctggtccgacatcgtcgctacaagcacactcatgagaaacccttcaagtgctcc
atgtgtgactatgccagtgtagaggtgagcaagctaaagcggcacatccgttcccacact
ggggagcgtccgttccagtgcagtctgtgcagctatgccagcagagacacctacaagctg
aagagacacatgaggacacactcaggagagaagccgtatgaatgctacatctgccacgcc
cgtttcacccagagtggaaccatgaagatgcacatcctgcagaagcacacagagaacgtg
gccaagttccactgcccccactgtgacacagtcatcgcccgcaagagtgacctgggtgtc
catctgcgtaagcagcactcgttcattgagcagggacggaaatgccgttactgtgatgct
gtgttccacgagcgctatgctctcatccagcaccagaagtcccacaagaatgagaaacgc
ttcaagtgtgaccagtgtgactactgctgcagacaagagcgtcacatgctgatgcacagg
cgcacacacacaggagagaagccgtacgcctgtagccagtgtgagaagaccttccgtcag
aagcagctcctggacatgcacttccggcgctaccatgaccccaactttgtgcctactgcc
tttgtgtgcaccaagtgtggcaagaccttcacccgcaggaacaccatggccagacatgca
gagaactgtaacggggatcctactgaaggagagaacggaaccccacccaagagaggacgg
ggtgggaggaagaggaagatgcgctcaaggaaggacgatgatgatgatgacgacgatagt
gaggacaatgctgatcctgagctggatgacattgatgaagaggatgaggatgccgaagag
gcactgctggaggaagaggaggaggagatggagttggagcaggctccacccaccaagcct
atccccgcccctgtggagccgcccgtcaagaggaaacggggtagaccccccaagaatgcg
cccaaacctgcctcacctgccaaagctagcaaggctgcccctaagggcaaggctgctgca
gcagcagccatcatccaggtggaggatgagaatacaggtgtcatagagaacatcatagtg
aagaatgagccagaggctgagcaggctgccatagaggtggtggtggagcagtcggaggag
gcagaggcaggggtggagacagtggagctgcctgtagcagaggctgcccccaatggagat
ctcacccctgagatgatcctcagcatgatggaccggtga
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