Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139399014
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Entry
139399014 CDS
T10872
Name
(RefSeq) partitioning defective 6 homolog alpha-like
KO
K06093
partitioning defective protein 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
ocla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139399014
09144 Cellular community - eukaryotes
04530 Tight junction
139399014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139399014
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Centriolar satellite
139399014
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Ortholog
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GFIT
Motif
Pfam:
PDZ
PB1
PDZ_6
L51_S25_CI-B8
Motif
Other DBs
NCBI-GeneID:
139399014
NCBI-ProteinID:
XP_071000769
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Position
1:27079557..27116115
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AA seq
405 aa
AA seq
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MVQSTGVQRANMSRHQRTPLKNTNNVVEVKSKFEAEYRRFALKKSGTGGFQEFYRLLQTV
HRIPSVEVLLGYADIYGDLLPINNDDNFYKALSSANPLLRIIIQKRDVDEPVVFATNSLQ
RRKKGLAGLRPAQQKTKPGLMIGHPQDFRQISSIIDVDILPETHRRVRLHKHGTHKPLGF
YIRDGVSVRVTPQGVEKVPGVFISRLVRGGLAESTGLLGVNDEILEVNGIDVDSKSLDQV
TDMMVANSHNLIVTVKPANQRNNVVLRGSKVSVGGNSSSGSIGSTISHDLAPSPASQSVS
HYSNSNSVAEGDSDEDGDLIIESDILPYLPHHCVSNGNGSHREFPLSSSLGKRPLPQSIF
LPSSGSLSDSKASLNSLTTPTHNGSPTKTSSSQESMREDGNIITM
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggttcaatccaccggggttcaacgcgcaaacatgtcaaggcatcagaggaccccattg
aaaaacacgaacaatgtggtcgaggtcaaaagcaaatttgaggcggagtacagacgtttc
gctctgaagaagagcggcacaggtggctttcaggagttctaccgactgctgcagactgtt
caccgcatccccagtgtggaggtgctgctgggatatgcggacatctatggtgacctgctg
ccaatcaacaacgatgacaacttctacaaggccctgtcctcagccaatccactactcagg
atcatcatccagaaaagagatgtggatgagcctgtggtctttgccaccaactccctgcag
aggaggaaaaagggtctggcagggttgcgcccggcacagcagaaaaccaaaccaggactg
atgattggccatccccaggacttccggcagatctcctccatcatcgatgtcgacatcctg
cccgagacacaccggcgcgtccgcctgcacaagcacggtacccacaagcccctgggtttc
tatatccgggacggggtgagcgtgcgggtcacgcctcagggagtggagaaggtgcctggt
gtctttatctcccggctggtacgtggaggcctggctgagagcacaggcctgctgggggtt
aacgatgagatcctggaggtcaacggcattgatgtggacagcaagtctctggaccaggtg
acagacatgatggtggccaacagccacaacctgatcgtgacggtgaagccagccaaccag
cgcaataacgtggttcttcgaggaagcaaggtctcggtaggggggaacagctcctctgga
tccataggctccaccatctcccatgacttggcccccagccccgcctctcaaagtgtcagt
cactatagcaacagtaacagtgtggcggagggcgacagcgacgaggatggagaccttatc
attgagagtgacatcctgccatacctgccccaccactgtgtgtccaatggtaatggcagc
cacagggagtttccattgtcctcgtcactggggaaacggcccctcccccagagcattttc
ctgcccagtagtggttctctgtcagacagcaaggcctctctgaactccctgaccactcct
actcacaacggcagccccaccaagaccagcagcagccaggagagcatgagagaggatggg
aacatcatcacaatgtaa
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