Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139399929
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Entry
139399929 CDS
T10872
Name
(RefSeq) ATP-dependent translocase ABCB1-like isoform X1
KO
K05660
ATP-binding cassette, subfamily B (MDR/TAP), member 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139399929
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139399929
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
139399929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_21
RsgA_GTPase
Rad17
AAA_16
AAA_5
AAA_7
AAA_29
AAA_28
AAA_25
AAA_18
Zeta_toxin
ECH_2
Motif
Other DBs
NCBI-GeneID:
139399929
NCBI-ProteinID:
XP_071001160
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MTRHAYYFIGIGCAVFLLGTFQVMLFLLTATKQTKRIREKYFHAILHQQMSWFDTHQIGV
LNVRLTDDINTINEGLGDKICVFVQFFCTFLSGFIIGFIFGWKLTLVILTVSPLLAGSAA
VWSKILATLTSKELSAYAKAGAVAEEILVAIRTVVAFNGQKKAVERYERNLEDAKNFGIK
KAITTNVSMGFTQFVIFGTYALAFWYGTKLSVDEPENYTIGKTITVFFSVMIGAFSLGQG
APNLEAIAKARGAAYEVYNTIDQPRPIDSSSKEGHKPDCVKGDIEFKNIHFSYPSRKDVK
ILEGVNLTVPRGKTIALVGASGCGKSTTIQLLQRFYDPDSGEITLDGRDIRTLNVKWLRE
NMGIVSQEPVLFGTTIAENIRYGREDATDEDIERAVREANAYDFISKLPDKLNTMVGERG
AQLSGGQKQRIAIARALVKNPKILLLDEATSALDTQSESVVQAALDKARAGRTTIVIAHR
LSTIRTADVIAGFSNGEVVEQGTHRELMAKKGVYYSLVMQQSQGKPEEDEEDPVEEDNPP
KYEDLDYVLYDSSDMDELEVGNEEGIENGGFEKNSISSGRVEMKPTRRKSKKSKKDKKKE
KKPDEAPDIPFTRILALNKPEWPYMLVGTLSSLVGGAVYPCVAIIFAKIIGVFSEVDPEV
KRQKTMMFSLLFLLIGGVAFVTYFLKGYMFGKSGELLTMRLRRQVFHAMMRQEIGWFDDN
NNAVGVLTTRLATDASLVKGATGSRLGLATNTVCALTIAIVVAFIHSWQLTLLILACVPF
LIGANFIQMRAMAGHASKDQGALEQSGKISTETVENFKTVVGLTREDVFFHKFMDSLERP
YQNGLVKAPIYGLTFAVAQAIPYMVNAAIFRFGSWLIAHCHTEYENVFLVFSVIIFAAMN
IGESASFAPDFAKAKAAAGRILGLLEKKPEIDIYSEEGEKPTDFVGDIEFRGIHFAYPTR
QNVRVLQGLNVSVGPGQTLALVGESGCGKSTSIQLLERFYSPAEGQVLVDGLDTKTLNLS
WLRSQLGLVSQEPILFDCSISENIQYGDNSREVSQDEIEEAAKNANIHDFIMGLPEKYNT
RVGDKGTQMSGGQKQRIAIARALVRQPKVLLLDEATSALDTESEKIVQQALDAARQGRTC
IVIAHRLSTIQNADQIAVIQYGQVTEQGTHTDLMAKGGAYYALVNAQVNH
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgactcgacatgcctattacttcattgggatcggttgtgctgtgttcctgctggggacc
tttcaggtgatgttgttcttgttgacagccaccaaacagaccaaacggatccgggagaaa
tacttccatgccatcctccaccaacagatgtcctggtttgatacacaccagataggagtt
ctcaacgtcaggttaacagatgacatcaacacaatcaacgaaggccttggagacaagatc
tgtgtgttcgtgcagttcttctgcaccttcttgtcagggttcatcattggtttcatcttc
ggctggaagctaaccctcgtcatcctgaccgtcagtcctctcctggcaggatcagctgcc
gtctggtccaaaatacttgccaccctgaccagtaaggagctgtctgcctatgccaaagca
ggggcggtagctgaagagatactggtggctatcaggacagttgtggctttcaatggacag
aagaaagctgtggaaaggtatgaaagaaacttggaggatgctaaaaactttgggataaag
aaagccatcaccactaatgtgtccatgggcttcacccagtttgtcatatttgggacgtac
gccttggctttctggtacgggaccaagctctctgtagacgagcctgaaaactacaccatt
ggaaaaaccattacagtcttcttctcggtgatgattggggcgttctctttgggccagggt
gcgcctaacttggaagccatcgccaaagcccggggtgctgcctatgaagtctacaatacc
attgaccagccgcggcccatagacagcagttcaaaggaaggtcacaaaccagactgtgtg
aaaggagacattgaattcaagaacatccacttcagctacccctccaggaaagatgtcaaa
attcttgaaggagtgaatctgacagtgcctcgtgggaagaccatagctctggttggagcc
agtggatgtgggaagagcaccaccattcagctgcttcagcgcttttatgatccagactca
ggagagattaccctggatggtcgggacatccggaccctgaatgtgaagtggctgagggag
aatatgggtatcgtcagtcaggaacctgtgctgttcggaacaaccattgcagaaaacatc
cgctatggcagagaggatgccacagatgaggacatcgaacgggccgtgagggaggccaac
gcgtacgacttcatctccaaactccccgataagctgaacaccatggtgggggagcgggga
gcccagctcagtggaggacagaagcagaggatagctatcgcccgggccctggtcaaaaac
ccgaagatcctcctgctggacgaggccacctccgccctggacacccagagtgagtcggtc
gttcaggccgctctggataaggccagagcgggccgcaccacaatagtgatcgcccaccgc
ctgtccaccatcagaacagctgacgtgatcgctggcttcagcaacggagaggtggtggag
cagggaacacacagggaactcatggccaagaagggggtttactactctctggtcatgcag
cagagtcaagggaagccagaggaagatgaagaggaccctgtggaagaggataaccctcct
aaatatgaggatctggattatgtcctatatgactcatctgacatggatgagctggaagtg
ggaaacgaggaaggaatagaaaacggcggctttgaaaagaactcaatcagcagtggccgt
gtggaaatgaaaccgaccaggaggaaatctaagaagtccaagaaggacaagaagaaggaa
aagaaaccagatgaagctccagacatccccttcaccagaatcctggccttgaacaagccc
gagtggccgtacatgttggtaggaaccctgtctagcttggtggggggagccgtttatccc
tgtgtcgccatcatcttcgccaagatcattggagtgttttccgaggttgacccggaagtc
aaacgacagaaaaccatgatgttttccctgctcttccttctcatcggaggagtggctttt
gtcacctacttcctaaagggttacatgtttggaaaatcaggagagcttcttaccatgagg
ctgaggaggcaggtattccatgccatgatgagacaggagattggatggtttgatgacaac
aacaatgcagtgggagttctaaccaccagattggccacagatgcatctctggttaaaggg
gcgactgggtctaggttgggtctggccaccaacacagtctgtgctctcaccatcgccatt
gtggtggccttcatccacagctggcagctcaccctcctcatcctcgcctgtgtgcccttc
ctcattggagccaacttcattcagatgagggccatggcaggccacgcctccaaagaccag
ggtgccctggagcagtctgggaagatatctacagagaccgttgaaaacttcaagacagtt
gttggattgacacgggaggacgtcttctttcacaagttcatggacagtctagaaagacca
taccagaacggtttggtgaaggctcccatctacggactaacatttgccgttgcccaagca
atcccttacatggtcaatgctgcaatcttccgcttcgggtcctggcttattgctcactgt
cacacagaatatgaaaatgttttccttgtgttttctgtgatcatatttgctgccatgaac
ataggagaatcagcatcttttgctcctgactttgccaaagcgaaagcagctgcggggaga
attcttggcttgttggagaagaaaccagagattgacatttacagtgaggagggagagaag
ccaacggactttgtcggggacattgagttccgagggatccactttgcgtacccgacccgt
cagaacgtgagggttctccaggggttgaacgtgtcagtggggcctggtcagaccctggcc
ctggtcggggagagtggctgtggtaaaagcacctccatacaactactggagcgcttctat
agccctgctgaaggacaagtgttagtggatgggttggatactaagaccctgaacctgtcg
tggctgaggtctcagctgggcctggtgtcccaggagcccatcctgttcgactgcagcatc
tcagagaacatccagtatggggacaacagcagagaggtctctcaggatgagatagaggag
gcagccaagaacgccaacatccatgacttcatcatgggcctgccagagaaatacaatacc
agggttggggacaaggggacccagatgtctggaggtcagaaacagaggatagccatcgcc
agagcactggtcaggcagcctaaagtactgctgctggatgaagccacttccgccctggac
acagagagtgagaagattgtccaacaggctttagacgccgcccggcagggccgcacctgc
atcgtgatcgcccaccgcctgtctaccatccagaacgcagaccagatagcggtaattcag
tatggtcaggtgacagagcagggtacacatactgacctcatggctaaaggaggggcttac
tatgccctggtcaacgcacaggtcaaccactaa
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