KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139400350
Entry
139400350         CDS       T10872                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139400350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139400350
   03036 Chromosome and associated proteins [BR:ocla03036]
    139400350
Spliceosome [BR:ocla03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    139400350
 Complex B
    139400350
 Complex C
   U2 SnRNP specific factors
    139400350
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    139400350
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 139400350
NCBI-ProteinID: XP_071001412
LinkDB
Position
3:60914116..60929488
AA seq 1326 aa
MAKVAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAKRKRRWDQTAEKQDQSGTPSNTGTPKKMSSWDQADQAAEQT
PGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHTT
PGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRW
DETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRP
LTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQIND
QPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQ
ITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASA
LGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ
QKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMD
AEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHF
WQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGN
LGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLW
RLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRI
CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLR
VAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLRY
ELEYFL
NT seq 3981 nt   +upstreamnt  +downstreamnt
atggcgaaagtcgccaaaacacacgaagacattgaggcccagatcctggagatccagggt
atgaaggctgccctggtggaggagggagcagatcagggtgtgggcctggactcaactgga
tattacgaccaggagatctatggtggcagtgacagccgcttcgctggatatgtcacctcc
attgctgccaatgaacaggaggatgatgacgaggaggactcttcaacaagtctacttgga
cagaagaaaccggggtatcatgctccggtggctatactcaatgcgataccacagtcagat
gaacagtacgacccgtttgccgagcacaggcccgccaagattgccgagcgtgaggacgag
tacaaggccagacgacgacagatgatcatctctccggagcgactcgacccctttgcagac
gggggcaaaacgccggacccaaagctgcagtccaggtcgtacatggatgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagaaaaggccaagacg
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgccgctgccgccgccaag
cgcaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaacccccagcaac
accggcacacccaagaagatgtctagctgggaccaggctgaccaggctgctgagcagacc
ccaggacacacccctggccacaccccctccaacagccgctgggacgagacccctggcagg
aataagggcagcgagaccccaggggccactcccagctcccggatgtgggacccaaccccc
agccacaccccggccggagcagccaccccaggcaggggggacacaccgggacacaccacc
cccggacatgggggagccacaggcagcgtgcgcaaaaaccgttgggatgagacccccaag
actgagagggagacccctggtcatggtagtggttgggccgagactccccgtacagacaga
ggagacgagtctgtgggagagacccccacccccggggccagtaagaggaagtcccgttgg
gacgagacccccgccagccagatgggctcttccactccactgatgacccctgggaagacc
cccattggaacccctgccatgaatatggccactccctctccaggtcacctgatgagcatg
accccagagcagctgcaggcgtggcgttgggagagggagatcgatgagagaaaccgacct
ctcacagacgatgagctagacgccatgttcccagagggatacaaggtccttcccccacca
gcaggctatgtgcccatccgtaccccggcccggaagctgtctgccacacccacccccatg
gggggcatgacgggcttccacatgcagcaggaggaccgctccatgaagcagatcaacgac
cagcccagtgggaacctgcccttcctcaaaccagacgacatccagtactttgataaactg
ctggttgaggtagatgagtccactctgagcccagaggaacagaaggagcgtaagatcatg
aaactgctgctgaagatcaagaacggaacacctcccatgagaaaggctgccctgcgtcag
atcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatcctgcccctg
ctcatgtctcctactctggaggaccaggagcgccacctactggtcaaggtcatcgaccgc
atcctctacaagctggacgatctcgtccgcccatacgtacacaagatcctggtggtgatt
gagcccctgctgattgatgaagattactacgccagagtggagggcagagagatcatctct
aacttggccaaggctgccggcctggccactatgatctccaccatgaggcctgatattgac
aacatggacgagtatgtcagaaatacaacagccagagctttcgctgtcgtagcgtccgct
ctgggtatcccatccctgctgcccttcctcaaggctgtgtgtaagagcaagaagtcatgg
caggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggttgtgcc
atcctgccccatctgaggagtctggtggagatcatcgagcatggtctggtggatgagcag
cagaaggtgcggaccatcagtgccctggccattgctgccctggcggaggctgccactccc
tacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatcagacagcac
agaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctaatggat
gctgagtatgctaactactacaccagagaggtcatgctgatcctcatcagagagttccag
tcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgtggtact
gacggtgtggaggccaactacatcaagacagagatcctgccccccttcttcaagcacttc
tggcagcacaggatggccctggacagacgcaactacagacagcttgtggacaccacagta
gagctggccaacaaggtgggagcagcagagatcatctctcgtatagtagatgacctgaag
gacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatggggaac
ctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatcctgtac
gccttccaggaacagaccactgaggactctgtaatgctgaacgggtttggcacggtggtg
aatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtactgtgg
cgtctcaacaacaagtctgccaaggtccgccagcaggcagctgacctcatctctcgtacc
gccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtggtgtta
tatgagtacctaggagaggagtatcctgaagtactgggaagcatcctcggtgctctcaag
gccatcgtcaacgtcatcggcatgcataagatgactccaccaatcaaagacctgctgccg
cgcctgacgccaatcttgaagaacagacatgagaaggtgcaggagaactgtattgacctg
gtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatgcggatc
tgttttgagctgctggagctcctgaaggcccacaagaaggccatccgcagagccactgtc
aacacctttggatacatcgccaaggctatcggaccccatgacgtgctggccacactacta
aacaacctgaaggttcaggagcgtcagaacagagtgtgtaccaccgtagccatcgccatc
gtggctgagacctgttctcccttcaccgtgctccccgcgctcatgaatgagtaccgcgtg
ccagagctcaacgtgcagaacggcgtgctcaagtccctctccttcctgtttgagtacatt
ggggagatgggcaaggactacatttacgctgtcacgcccctgctggaggatgcactgatg
gacagagacttggtccacagacagacagccagtgccgtggtgcagcacatgtccctgggc
gtctacggcttcggctgtgaagactcgctcaaccacctgctcaactatgtgtggcccaac
gtgtttgagacgtcgccccacgtcatccaggctgtgatgggggccttggaaggcctcagg
gtggccatcggcccctgccgcatgctgcagtattgcctacagggtctgttccacccagcc
aggaaggtgcgagacgtctactggaagatctacaactctatctacatcggctcccaggat
gctctcattgctcattacccacacgtctacaacgatgagaagaacccttacctccgctat
gagctggagtacttcttgtga

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