Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139400855
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Entry
139400855 CDS
T10872
Name
(RefSeq) histone deacetylase 6-like
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139400855
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139400855
04131 Membrane trafficking [BR:
ocla04131
]
139400855
03036 Chromosome and associated proteins [BR:
ocla03036
]
139400855
Enzymes [BR:
ocla01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
139400855
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139400855
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
139400855
Membrane trafficking [BR:
ocla04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139400855
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
139400855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
139400855
NCBI-ProteinID:
XP_071001548
LinkDB
All DBs
Position
Unknown
AA seq
667 aa
AA seq
DB search
MVEKQGLLSRCVTVEARAASNEELHLVHTKEYVDLMSSTQRMDEDQLKTLSDSYDSVYIH
PESYTCASLAVGSVLQLVDKVMTSELRNGFSVARPPGHHAQVDQMNGYCMFNNLAIAARY
AQTRHRVERVLIVDWDVHHGQGIQYIFQEDPSVLYFSVHRYEEGLFWPHLPESDSSAVGT
GSGEGYNINLPWNKIGMKDADYVAAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMS
ASPQCFSVLTHMLLGLAQGKLLLVLEGGYNLQSTAEGVCACLRSLLGESCPRLGSPLIPS
DSALKSISRSISALYPYWTSLQVLEGGPLSDSDPLNPALTPAESSEDFSEELCEEKRDSL
DLTTGLVYDQRMMEHHNMWDSHHPELPQRIQRIFSHHDDLGLVSRCLRIPARLALEEELA
LCHSLEHIAKIKATEGMKTRDLHRLGDEYNSIFISTESYRSARLAAGACFNAVQAVLTGQ
VRNGVAIVRPPGHHAEKDAACGFCFFNSAALTARYAQSISQKPLRVLILDWDVHHGNGTQ
HIFEEDDSVLYISLHRYEDGTFFPTSEDAHYNRVGEGKGAGFNVNIPWNGAKMGDAEYLA
AFHSVVMPIAREFDPGLVLVSAGFDAARGDPLGGYQVTPPGYAHLTHLLMGLAGGRVLVI
LEVSGLN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggtggagaaacagggactgctgtctcgctgtgttacagtggaggccagggctgcgtct
aacgaagagctgcacttagttcacacgaaggagtatgtagatctgatgagctccactcag
cgtatggacgaagaccagctgaagacgttgtctgactcctatgactctgtctacatccac
cctgagtcatatacgtgtgccagtctggctgtgggctctgttctgcagttggttgataag
gtcatgacctcagagctccggaatggattctctgttgctagacctccaggccaccacgcc
caggtcgaccagatgaatggttactgtatgttcaataatctggccatcgcagcgcgctac
gcacagacacgccatcgagtggaacgagttctgatagtggactgggatgtgcatcacggc
caggggatccagtacattttccaggaggatcccagcgttctgtacttctcagtccacaga
tatgaggagggtttgttctggccccatctgcccgagtcagacagcagtgctgtgggcacc
ggttctggggagggatacaacatcaacctgccctggaataagattggaatgaaagatgca
gactacgttgccgcattccagcagcttcttttgcctgtagcctacgagttccagcctcag
cttgtcctggtggcagcaggcttcgactctgtgataggggatcccaagggagagatgtct
gccagtcctcagtgtttctctgttctgactcacatgctgctgggcctggctcaggggaag
ttgttgctggttctcgagggaggatataaccttcagtccacagcagaaggggtgtgtgcc
tgtctgaggtcactattgggggagtcctgcccccgcttggggtcaccactcatcccgagt
gacagtgccctgaaatccatctccaggtcgatctctgctctgtacccttactggaccagt
ctgcaggtactggagggagggcctctatcagacagcgaccccctgaacccagccctgacc
ccagcagagagcagtgaggattttagtgaagagctctgtgaggagaaaagagacagcctg
gacctgaccacgggcctggtgtacgaccagaggatgatggaacatcacaacatgtgggac
agccaccacccagagcttccccagaggatccagcgtatcttctcccatcacgacgacctg
ggcttggtgtcccgttgcctgaggataccggctcgacttgccttagaggaggagctggct
ctgtgccacagcttggagcacatagccaagatcaaggccacagaggggatgaagacgagg
gaccttcacagactgggagatgagtacaactctatcttcatcagtactgagagctacagg
agcgcccggttggccgctggggcctgctttaatgcagtacaggctgttctgacgggacag
gtccgtaatggcgtggccatcgtgcgcccccctggtcaccatgccgagaaggacgctgcc
tgtgggttctgtttcttcaactccgccgccctgactgcccgatacgcccagtccatctcc
cagaagcccctgcgggtcctcatcctggactgggatgttcaccatggcaacggaacacag
cacatcttcgaagaggatgacagtgtcctctacatctccctgcatcgctacgaggatggg
accttcttccctacttccgaggacgcacactacaacagagtgggcgaggggaagggagca
gggttcaacgtcaacatcccctggaacggagccaagatgggcgacgcggagtaccttgca
gccttccactcggtggtcatgcccatcgctagagagtttgacccgggcctggttctggta
tcggcagggtttgatgcagccagaggggaccctctaggagggtaccaagtgacccccccg
ggctatgcccacctcacccacctcctgatgggcctggcaggcggcagagtattggtcatc
ctggaggttagtggtctgaattaa
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integrated database retrieval system
