Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139401032
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Entry
139401032 CDS
T10872
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139401032
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139401032
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
139401032
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
139401032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_GCN1
XMAP215_CLASP_TOG
HEAT_EF3_N
HEAT
HEAT_EZ
HEAT_MROH2B_C
TOR1L1_N
TPR_CAND1
HEAT_DAAF5
Cnd1
Sec7-like_HUS
VPS15-like_hel
RTP1_C1
Dopey_N
ParcG
MMS19_C
TAN
DUF2726
Motif
Other DBs
NCBI-GeneID:
139401032
NCBI-ProteinID:
XP_071001661
LinkDB
All DBs
Position
3:62535428..62635162
Genome browser
AA seq
1637 aa
AA seq
DB search
MEVNMEYCLAQVVQKDLGRKVQVGQELIDYIVDKEKSQDLEQDQTALDRMVDGIATTWVN
SSNFKVALLGIDLLSALVTRLQDRFRNHVGTVLASLIDRLGDSKDQVRDQDQILLLKIME
QAASPQYVWDRMLGGFKHKNNRTREGACLCLISTLNMYGAQGLTLSKIVPHICNLLGDPT
SQVRDAAMGCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSRFDEVQRSGNMIPSSGSDK
NFDDEDSVDGGRSSSSASSSKAPPSGRRAVAAASVRRPSSATGPGKISAKDAAAGAVDEE
DFIKAFEEVPTIQIHSNRDMEDNLSKVREVLSDDKNDWEHRVVALKKVRSLLLAGALDYD
SFPQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSTLLGNKFDHCAETLMPTLLNLVPN
SAKVMATSGMAAIRLILRHTHYSRLIPIITSNCTSKSVAVRRRSYEFLELLLLEWQTHTL
ERHVAVLTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESTYQKALQSHL
KSSDSVVSLPQSDRSSSSSQESLNRPLSVKSAIGGSMTRGKMVSSRVNSNSGGSLQRSRS
DVDVNAAASAKSRLITVPSASPFSSAATLPPGSYASLDGTPGKIDTGRVRTRRTSSGNAV
GASATVTDSRGRSRAKMMSQSQRSRSANPTGGGKARTSSNQTGSRSSSPGKLLGHSSGYG
RISRPPSASSTPADKRSKVPRSQGCSRDSSPNRLGLARSRIPRPSMSQGCSRDTSRESSR
DTSPARGFKPLASRRTSRSTSALSTADPHSQSDRFGLIHQARISASVNAMRVLNTGTEVE
AAVADALLLGDSRNKRKPMRRRYESPGIYSDDDANSDASSACSERSYGSRNGGIPHYLRQ
TEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRILSRVELKRLCEIFTRMFADPHSKVF
SMFLETLVDFILVHREDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDITRESFPFDQ
QFNILMRFIVDQTQTPNLKVKVAILKYIESLGRQMDPTDFVNSSETRLAVSRIITWTTEP
KSSDVRKTLHNWVVEELSGRSGTAALLEGHLEERCKQAAQVVLISLFELNTPEFTMLLGA
LPKTFQDGATKLLHNHLKNSSNTSSVSSPSNTIGRTPPRHTPSRTSPLTSPTNCSHGGLS
PSRLWGGCWSGDGLSKHPPPPHPPPPPSTPSGPALRVLRRAYSPSMLEYDTENMNSDEIY
SSLRGVTEAIQSFSYRSQEDLNEPRGKRDDAVGREGVASSPGSDARLGLDVVEGGRTALD
NKTSLLNTPSPRSFSGPRAREFAPYGYGDTITSSYDKSALKEAVFDDDVEQFRDCRRQDG
SGENKMVLPKGFAPGSQDHSDLVADLLKELSNHNERVDERKGALVELLKITREDSLAVWD
EHFKTILLLLLETLGDKDHTIRALALRVLKEILRNQPARFKNYAELTIMKTLEAHKDSHK
EVVRAAEEAASTLAGSIHPEQCIKVLCPIVQTADYPINLAAIKMQTKVIERITKESLHQL
LPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELKPHLQLLTGSKMKLLNLYIKRA
QTTNSNSSSSSDVSSHS
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaatatggagtattgtctggcccaggtggtgcagaaagacctggggcggaag
gtgcaggtgggacaggagctcatagattacatcgtggataaggagaagtcccaggacctg
gagcaagaccagacggctctggacaggatggtggacggcatcgctaccacctgggtcaac
tcctccaatttcaaggtggctttgctaggtatagaccttttatctgccttagtgacaagg
ttacaggaccgatttaggaaccatgtgggaacagtactggccagtctgatagatcgtctg
ggtgattccaaagaccaagtcagagaccaagatcaaatcctgctgctgaagatcatggag
caggctgcctccccacagtatgtttgggacagaatgctgggaggcttcaaacacaagaac
aacaggaccagagagggagcgtgcctttgtctcatctcaactctcaacatgtacggagcc
caaggcctaaccctcagtaaaatagtccctcacatatgtaatcttctaggagatcccacc
agtcaggtgagagacgcagctatgggctgcctggtggagatctacagacacgtgggggag
agggtgaggatggaccttagcaagaagggcctgccacagtcacggttgaatgtaatcttc
agccgatttgatgaagtccaaagatctgggaacatgatcccatcctcaggttcagataag
aactttgatgatgaggactctgtggacgggggccggtcctcctcctctgcatcgtcctcc
aaggcgccccccagtggtaggagggctgtagctgcggcttctgtccgcaggcccagctct
gccaccggacccggcaagatctctgctaaagatgctgctgcaggtgctgttgatgaggag
gacttcatcaaggcttttgaagaggttcctactattcagatccactccaacagagatatg
gaggacaatctctccaaggttcgggaggttctatctgacgacaaaaacgactgggagcac
agagtcgtcgccctgaagaaggtgcgttctctgctcctggctggagcgctggactatgat
agtttccctcagcagctccgtctgctggaggcccctctcaagctgtcagctaaagacctg
aggtcccaggtggtacgagaggcctgcatcacactgggatacctgtccacgttgctggga
aacaagtttgaccactgtgcagagaccctgatgcccacactgctcaacctggtgcccaac
agtgccaaggtgatggccacgtctggcatggcagccatacgtctcatcctcaggcacaca
cactactcacgtctcatccccatcatcactagtaactgcacgtccaaatcagtggccgtc
cgaaggcgcagttatgagttcctagagctgttattactggagtggcagacacacacactg
gagaggcacgtggctgttctgactgaaaccatcaagaaagggatccatgatgctgactca
gaggccagatcggtcgcgagaaagtgttattggggtttccatggccactacagccgggag
gcggagcatctgttccaggccctggagtcaacctatcagaaggctctgcagtctcacctg
aagagttctgacagtgtcgtgtctctcccccaatcagaccgctcatcctcctcctcacag
gagagcctcaatcggcccctgtctgtcaagagtgccataggaggcagcatgacaagaggt
aagatggtgagttccagggtgaactccaactccggcggttcccttcagcgttcccgtagt
gatgtcgacgtgaacgccgcggccagcgccaagtcacgcctgatcaccgtgccctccgct
tctcccttcagctcagcagctaccctgcccccaggctcctacgcctcactagatggcaca
cccggtaaaattgatactggccgtgtgcgtacgaggagaacaagctccggcaatgctgtc
ggagccagcgctactgtgactgacagcagggggcgcagccgagccaaaatgatgtcccag
tcccagcgatccagatctgctaaccccactgggggtggtaaggcccgaacttcatccaat
cagactggcagtcgctccagttcccctggcaagctgctgggccactcgtctgggtacggg
aggatcagcaggcccccctcagcctccagcacccctgcagacaagaggagcaaggtcccc
cgcagccagggctgcagtagagattcctctcccaacaggctgggcctagcaaggagccgt
atcccccggcccagcatgagtcagggctgcagcagggacacatctagggaaagcagccga
gacaccagccctgctcggggcttcaagcctcttgcctcccgacgtacctcccgctctacc
agcgccttatccacggctgacccccacagccagtcagaccgatttggtttgatccaccag
gcccgcatttctgcctcggtgaacgccatgagagtcctcaacactggcactgaggtggag
gctgctgtggctgacgcactgttattaggagactccagaaataagcggaagcctatgagg
cggcgctatgagtctcctggtatctactctgacgatgacgctaacagtgatgcgtccagc
gcctgctcggaacggtcgtacggctcccggaacggaggtatccctcactacttgcgtcag
acagaggatgtggcagaggtactcaaccactgtgccagctccaactggtctgagaggaag
gagggactgctgggactgcagaacctgctgaagagccaaagaatactcagccgggtggag
ctgaagagactctgtgaaatcttcaccaggatgttcgcagatccacacagcaaggtgttc
agtatgtttctagagactctggtagactttatcctggtgcacagagaggacctgcaggac
tggctgttcgtcctgctcacccagctactgaagaagatgggagctgacctgctggggtct
gtccaggccaaggttcagaaggctctggacatcaccagggagtcttttccgtttgatcag
cagtttaacatcctgatgagattcattgtggatcagacacagacacccaacctcaaggtg
aaggtagccatcctgaagtacatagagtcactgggaagacagatggatcctacagacttt
gtcaactccagtgaaacgcgactggctgtatctcgcatcattacgtggaccacagaaccc
aagagctctgacgtcaggaagacccttcataactgggtggtggaggagctatcaggcagg
tccggtactgcagccttactggaggggcacctggaagagaggtgtaagcaggcggcccag
gtggtgctgatttctctgtttgagctgaacaccccggagttcaccatgctgctgggagcc
ctgcccaagaccttccaggacggggccaccaagctgctccacaaccacctcaagaactcc
agcaacaccagcagcgtgagttctcccagcaacactattgggcggaccccaccccgccac
acccccagccggaccagccccctcacctctccgaccaactgctcccatggtgggctgtct
ccgagtcggttgtggggtgggtgttggagtggcgatgggctgtctaagcacccccctccc
cctcatcctcctccgcctccctccaccccctctggccccgccctcagggtcctccgcaga
gcgtactctcccagtatgttggagtatgacacagagaacatgaactctgatgagatatac
agctccctgcgaggggtcacagaggccatccagagtttcagctatcgcagccaggaggac
ctcaacgaaccaagagggaagagggacgatgctgtggggcgtgaaggtgtggcgtcctcc
ccaggctcggatgcccgtttggggctggatgtggtggagggtgggcgtacggccttggat
aacaagacctccctcctcaacactccgtctccccgctccttctccgggccgcgggccagg
gagttcgccccctacggctatggggacaccatcacctcatcctacgacaagagtgcccta
aaggaggccgtgttcgacgatgacgtggaacagttcagagactgccgtcggcaggacggc
agtggtgagaacaagatggtgctgcctaagggctttgctccgggttcccaggaccactca
gaccttgtggcagatcttctgaaggagctgtccaatcacaacgagcgtgtggatgagcgt
aagggggccttggtggagctgctgaagatcacacgagaggacagcctggctgtgtgggac
gaacacttcaagaccatcctcctactgctcctggagacactgggggataaagaccacacc
atccgggccctggctcttcgggtactgaaggagatcctgagaaaccaaccggcccgcttc
aagaactatgctgaactcaccatcatgaagaccctggaggcacacaaagactcccacaag
gaggtggtgcgggcagcggaggaggctgcctccaccctagccggctccatccacccagag
cagtgtatcaaggtgctgtgtcccatcgtccagacggctgactaccccatcaacctggct
gccatcaagatgcagaccaaggtgatcgaacgcatcaccaaggagtccctccaccagctg
ctgcctgacatcataccaggactactgcagggctatgacaacacggagagtagtgttcgc
aaagccagtgtgttctgtctggtggccatctactccgtgattggagaagagctcaaacca
cacctgcagctactcacaggcagcaagatgaagctgctgaacttgtacatcaagagggcc
cagacgaccaacagcaacagcagcagttcctcggatgtgtcctcacacagctag
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integrated database retrieval system
