Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139401112
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Entry
139401112 CDS
T10872
Name
(RefSeq) transportin-2-like
KO
K18727
transportin-2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139401112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139401112
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
139401112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TOR1L1_N
HEAT_2
Vac14_Fab1_bd
TPR_IMB1
HEAT_EF3_N
PDS5
TPR_DNAAF5
TPR_IPO5
Cnd1
HEAT_MROH2B_C
Adaptin_N
Arm
MMS19_C
Ltn1_1st
Dopey_N
HEAT_MROH2B_1st
TPR_CAND1
UNC45-central
INTS7_N
TPR_TTI1_C
VPS15-like_hel
SCD
DUF1475
RTP1_C1
TPR_IPO11
DUF2573
Sec7-like_HDS
Urb2
Motif
Other DBs
NCBI-GeneID:
139401112
NCBI-ProteinID:
XP_071001690
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
LTRSVCVCSLDQGSFGALQKICEDSSELLESDALNRPLNIMIPKFLQFFKHCSPKIRSHA
IACVNQFIIGRAQALMDNIDTFIESLFALATDEDSEVRKNVCRALVMLLEVRIDRLIPHM
HSIIQYMLQRTQDPDENVSLEACEFWLTLAEQPICKEVLSGHLVQLIPILVNGMKYSEID
IILLKGDVEEDEAVPDSEQDIKPRFHKSRTVTLQHEGGEGEEGEDIDEDDDDDDDTLSDW
NLRKCSAAALDVLANVFRDELLPHLLPLLKGLLFSPDWVTKESGILVLGAIAEGCMQGMV
PYLPELLPHLIACLCDKKALVRSIACWTLSRYAHWVVSQPPDSHLKPLMTELLKRILDGN
KRVQEAACSAFATLEEEACTELVPYLSFILDTLVFAFGKYQHKNLLILYDAIGTLADSVG
HHLNQPEYIQKLMPPLIAKWNELKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCV
TLVQKTLAQAMTDHQMEDCPLLSGGREVERRDGESGEWQPHPCSLPPLRLTIRWKTVHFS
AEGGR
NT seq
1639 nt
NT seq
+upstream
nt +downstream
nt
tttgactcggtctgtctgcgtgtgttctcttgatcagggctcgtttggagccctgcagaa
gatctgcgaggactcgtcggagctgttggagagcgacgcactcaaccgcccgctcaacat
catgatccccaagttcctgcagttcttcaagcactgcagccctaagatcagatctcatgc
catcgcctgtgtgaaccagttcatcatcggcagagcccaggccctgatggacaacatcga
caccttcattgagagcctgtttgcgctggctacagacgaggactctgaggtgaggaagaa
cgtgtgccgggctctggtcatgctgctggaggtccgtatcgaccggctgatccctcacat
gcacagcatcatacagtacatgctgcagcgcacacaggacccggatgagaatgtttctct
ggaggcctgtgagttctggctcaccctggctgagcagcccatctgtaaagaggtgctctc
tggacacctggtgcagctcattcctatcctggtgaacggcatgaagtactctgagataga
cattatcctgctgaagggtgatgtggaggaggacgaggctgtgccagacagtgagcagga
catcaagccccgcttccacaagtcccgcaccgtcaccctgcagcacgagggaggagaggg
cgaggagggagaggacatcgatgaagacgacgatgatgatgacgatacattatctgactg
gaacctacgcaagtgttcggcggcagcgctggatgtgctggccaatgtgttccgagacga
gctgctgcctcacctgctgcccctgctcaagggccttctcttctcccctgactgggtcac
caaggagtctggcatcctggtgctgggggccatcgctgagggctgtatgcagggcatggt
gccctacctcccggagctcctcccccacctcattgcatgcctgtgtgacaagaaagccct
ggtgcgctccatcgcctgctggaccctgtcccgctacgcccactgggtggtcagccagcc
cccagactcccacctcaaacccctgatgaccgagctgctcaagaggatactggacggcaa
caagagggtgcaggaggccgcctgcagtgcgtttgccaccctggaggaggaggcatgtac
agagctggtgccctacctcagcttcatcctggacacgctggtgttcgccttcggcaagta
ccagcacaagaacctgctcatcctctacgacgccatcggaacgctcgccgactccgtagg
acaccacctcaaccagcctgagtacatccagaagctgatgcctccccttattgccaaatg
gaatgagctgaaggacgaggacaaggatctctttccacttctggagtgcctgtcgtcggt
ggccacggccctgcaaagtggcttcctgccctactgtgagcctgtctaccagcgctgtgt
aaccctggtccagaagaccctcgctcaggccatgactgaccatcagatggaagactgtcc
acttctcagcggagggagggaggtagagcggagagatggggagtctggggaatggcagcc
tcacccctgctcccttcctcccctcagactgaccatcagatggaagactgtccacttctc
agcggagggagggaggtag
DBGET
integrated database retrieval system
