Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139401637
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Entry
139401637 CDS
T10872
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139401637
Spliceosome [BR:
ocla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139401637
Complex C
U4/U6.U5 tri-SnRNP related factors
139401637
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MA3
MIF4G
DUF7026
Motif
Other DBs
NCBI-GeneID:
139401637
NCBI-ProteinID:
XP_071001831
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All DBs
Position
3:complement(66332173..66389954)
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AA seq
1080 aa
AA seq
DB search
MISTSSSESAKLVEKDRGEMATKTNDNDLAVELSSTSKEEHSRSSGMGQPRRSPSEEGEG
ENDVAQQRSSMEATEGADSPAASPGPKGPRVASSEAPIVLGSPGVASPGVASSRATRGSR
APSSASVSQEEDESSGSDGSSDEAVGCRMKSSVAQIMRGPDDQSANRGRSPTPDDRDGDR
RSSCSRSRSRSQERGRRYGGGGYGRSREDDRNRDRYYERQSSRDREAEFRRRGRSPSPAK
KDPATEEPPVKKKKEELDPILTRTGGAYIPPAKLRMMQAQITDKSSLAYQRMSWEALKKS
INGLINKVNVSNIAMIIQELLQENIVRGRGLLARSTLQAQSASATFTHVYAAVVAIINSK
FPQIGELILKRLILNFRKGYRRNDKAQCLTASKFVAHLVNQNVAHEVLCLEMLTLLLERP
TDDSVEVSISFLKECGLKLTEVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAIRKD
GFKDHPIVPEGLDLVEEEDQFTHMLPLEDDYNQEDILNVFKMDTDFLENEEKYKAIKKEI
LDEGSSDSGEDANGSDDDEDDDNDGEKEGEEGGDEAEKVTIFDQTEVNLVAFRRTIYLAI
QSSLDFEECAHKLIKMDFPDSQTKELCNMILDCCAQQRTYEKFFGLLAGRFCLLKKDYME
SFEAIFMEQYETIHRLETNKLRNVARMFAHLLYTDSVPWSVLECIKVSEDTTTSSSRIFV
KILFQELCAYMGLPKLNERLKDMTLQPFFEGLFPRDNPRNTRFAINFFTSIGLGGLTDEL
REHLKNAPKIIMTQNQEVESSDTDSSSDSSSSDSDSSDSDSSDSSSDSSSSSSSSSDSDS
RRKKSKGQRKNKKSDKDKKKDKMTKSKASSKNTSSNQKSPLEQRPNKSPRNDNRRRNDSS
SDEEAAKRGGSRPEPEDHHKFSRHRGREEDAPQPMYERPHRDRGGHQDEEQPRGRPDRGR
DYEDSDRHPESRRHNRDDGGKYDGKHQAPQVDQADHDRVRHRSPEKEKEPARYRNRERSK
SREKSSRKEKDTDSSRNSYRNGVEQQAERADKENRHHSDRYREPRRNEERSRDSSPRRRR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgatatccacgagttcatctgaatcagcaaaacttgtggaaaaagacaggggggaaatg
gctacgaagacgaacgacaacgatttagcagtggagttgagctctacttctaaagaagag
cattccaggtctagtggcatgggtcagccccgcaggagcccgtcagaggaaggagagggg
gaaaacgatgtggcacagcagaggagcagcatggaagctacagagggggcagatagccct
gcagccagtcctggacccaaaggtcccagagtggccagctcagaggcccccatagttcta
ggcagtcctggagtggccagtccaggagtagccagctccagagccaccaggggtagtagg
gccccatccagtgccagtgtcagccaggaggaagatgagtccagcggctctgatgggagc
agtgatgaggcagtaggctgcaggatgaagagcagcgtggcacagatcatgcgtggtcca
gatgaccagagtgcgaacagaggcaggagccccaccccagatgacagggatggtgatcgc
cgcagttcctgctctaggtcccgttccagaagtcaggagaggggccggcgctacggtgga
ggaggttatggcaggtcaagggaggatgatcgtaacagggaccgatactacgagcgccag
tcaagtcgtgacagagaggctgagttcaggaggagaggccggtcgccctccccagccaag
aaagacccagctacagaggaaccaccagtgaagaaaaagaaggaggaactggaccctatc
ctgaccaggactggtggagcttacatccccccggccaaactgcgcatgatgcaggcccag
atcactgacaagagcagtctggcgtaccagcgtatgagctgggaggctctgaagaagtcc
atcaacggtctgatcaacaaggtgaatgtgtccaacatcgccatgatcattcaggagctg
ctgcaggagaacattgttaggggcagaggtctcctggccaggtccaccctgcaggcccag
agtgcttcggccaccttcacccacgtctatgctgctgtggtagccatcatcaactccaag
ttccctcagataggagagctcatcctcaagagactcatccttaacttccgcaagggctac
cggaggaacgacaaggcacaatgtctcacggcatcaaagtttgttgctcatctcgtcaat
cagaatgtggcccatgaggtcttgtgtctggagatgttgactctgctcctggagagacct
actgacgacagcgtggaggtgtccatcagcttcctcaaggagtgtggcctcaaactcacg
gaggtttcccctaggggcatcaatgccattttcgagcggctgcgcaacatccttcacgag
tcagagattgacaagcgggtgcagtacatgatcgaagtgatgtttgccatcaggaaggat
gggtttaaggaccaccctatcgtcccagaggggctggacctggtggaggaagaagatcag
ttcacacacatgctgcccctagaggacgactacaaccaagaagatatactcaatgtcttt
aagatggatacagacttcttggagaacgaggagaagtacaaagcaattaaaaaggagatc
ctggatgagggcagcagcgactctggagaggatgccaatggaagtgatgatgatgaagat
gatgataatgatggagaaaaggagggggaagagggtggagatgaagcagagaaagtcacc
atctttgaccagacggaagtcaacctagtcgcatttcgccgtaccatctatctcgccatc
cagtcaagtttggattttgaggagtgtgcccacaaattgatcaagatggactttcctgac
agccaaacgaaagagctgtgcaacatgattctggactgctgtgcccaacagaggacatac
gagaagttctttggtcttctagcagggaggttttgtctgctgaagaaggactacatggag
agttttgaggccatcttcatggagcagtatgaaaccatccatcgcctagagaccaataaa
ctgaggaacgttgctagaatgttcgcccatctcttgtacacagactcagtcccgtggagt
gtgctggaatgtattaaagtcagtgaggacaccaccacctcatccagtcgtatcttcgtc
aagatcttgtttcaggagctctgtgcctatatgggacttcccaagctcaatgaacgactc
aaggatatgacgctgcagcccttctttgagggtctttttcctcgtgacaaccccaggaac
accagattcgccattaatttcttcacctccatcggcctgggtggacttacggatgagctc
cgtgagcatctaaagaacgcccccaagattatcatgacccagaaccaggaagtggagtcg
tctgacaccgactcgtcctctgactcgtcctcctcagacagtgacagcagcgacagtgac
agctctgactcttccagtgactcctcctcctcatccagcagcagctcagattctgactcg
aggcgtaagaagagcaagggccagagaaaaaataagaagagtgacaaagacaagaagaaa
gacaagatgaccaagtccaaggcttcttccaaaaatacctcctcaaatcagaagtcacca
ctggagcaacggcccaataagagcccgagaaacgacaaccgtcgccgcaatgacagcagt
agcgatgaggaggcggcgaagcgcggtgggagtagaccagagcctgaggaccaccacaaa
ttctctcgccaccggggtcgagaagaagacgcgccacaacccatgtatgagagaccccac
cgcgaccgtggggggcaccaagatgaggagcagcctcgtggcaggcctgacagaggcaga
gactacgaggacagtgacagacatccagagtcccgcaggcacaacagggacgatgggggg
aaatatgatgggaaacaccaagccccccaggttgaccaggctgaccatgacagagtcaga
caccgcagccctgagaaagagaaggaaccagccaggtacagaaacagagagaggtcaaag
tcacgggagaagagcagccgcaaggagaaagacacagattcttccaggaactcgtacagg
aacggggtggagcagcaagcagagcgggcggacaaggagaaccgccatcactctgacaga
tacagagaacccaggagaaacgaggaacggagcagggatagctccccacgtagacggaga
tag
DBGET
integrated database retrieval system
