Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139401850
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Entry
139401850 CDS
T10872
Name
(RefSeq) transmembrane channel-like protein 6
KO
K21988
transmembrane channel-like protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
139401850
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139401850
03037 Cilium and associated proteins [BR:
ocla03037
]
139401850
Transporters [BR:
ocla02000
]
Other transporters
Pores ion channels [TC:
1
]
139401850
Cilium and associated proteins [BR:
ocla03037
]
Other cilia and associated proteins
Stereociliary proteins
139401850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TMC
Motif
Other DBs
NCBI-GeneID:
139401850
NCBI-ProteinID:
XP_071001934
LinkDB
All DBs
Position
Unknown
AA seq
817 aa
AA seq
DB search
MAYSVDFNLRPIMELELESLRGDDTAQDSMTGTGLESGSPETLEMEVLTTEGRDRLASQM
SDVRERADERSEESIQTNLLVRKSWSTATLRVLSSMPSRSIGQQSRLEIISQCNIRSTQL
RRYHRQTQDVSLSSRPSIRGYGIEADSEDVCEEETKRQELVNSLQSLSAGDRVRMLRATP
LSLAEKTKLRKLVFSDKVGQSLLSSQVPCCSLLKRALYHIWFGCLFILSSLQLWQVALKR
LGGRFGTGVLSYFLFIRTLLLFNVFLFLINGLFLVLPQAIHPPLHTPSSHRVTGLELFTG
TGYLSNSLMFYGYYTNSTINTSCRPDEATAGTGCGTTSDPHMMAYNIPLAYCFTIGITFF
ITGIVLVYSMSKSFERSFRVFKSQGNMAIKVFCSWDFKVSKKMSIRMQSENITTQLKELL
SEVKGGEEEKGRLSGMAVHLLAWSISLGSTFFCALGIHCFAKYMHLRRLEDAEGEVSVVH
EARLLALPGVVSCGNLLLPGLFNLVSWMENFNSPIVRLYVSIFRNLLLKVSILGVLCYHW
LGKIAAEPEQHGLQCWESFVGQELYRFLLVDFIFTVLYTVFGEFIWKRFSQGVLRRRRKP
VFDIARNVLELIYGQTLTWLGLLFTPLLPAVQILKLLLLFHMKKSSLLVNCQASRKPWRA
SQMSTLFISLLCFPSFLGATVSVTYTIWTIKPSSGCGPFRNLPFIFHSGKQWAQELKSTN
HKLAWLNWVHSCLVENPLFLFLLAGVFLMVIYIHTQVLDGQRKIISLLQEQIENEGKDKK
FLITSLHAIHEKRQYPLSPSSRPQPQGSEVEYVLVED
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggcatacagtgtggacttcaatctgagacctataatggagcttgaattagagagtctt
aggggtgatgatacggcccaggactctatgacgggaacaggtctggagagtggcagtcct
gaaaccctggaaatggaggtccttacaacagaaggcagagataggctggccagccagatg
agtgatgtcagagagcgggcagatgagaggagtgaggaatccatacagaccaaccttctg
gtcaggaagagctggtctaccgccaccctgagggtcctgtcctccatgcccagtcgcagc
atcgggcagcagagtcgtcttgaaatcatctcccagtgcaacatccgttctactcagctg
cgcaggtaccaccgccagacccaagacgtttccctctcctccagacctagtatccgtggc
tatgggatcgaggcagactctgaggatgtctgtgaggaagagaccaagagacaggagctg
gtcaacagtcttcagagtctgtcggccggtgaccgtgtgcgtatgctgcgtgccacgccc
cttagtctggctgagaagactaaactgaggaaacttgtattcagtgacaaagttggacag
tccctcttgagcagccaggttccctgctgtagcctccttaagcgagctttgtatcacatc
tggttcggatgtctcttcatcctcagttccctgcagttgtggcaggtggctttgaagagg
ctgggtggccgctttggcactggtgtgctctcctactttctcttcatcaggactcttctg
ctcttcaacgtctttctcttcctcatcaacggcctgttcctggtcctcccccaggccatc
cacccgccccttcacacccccagctcccacagagtcacaggcctggagctgttcaccggc
acgggttatctctcgaactctctaatgttttatggctactacaccaactccaccatcaac
acaagttgtagacctgatgaagctaccgccgggactggctgcggcaccaccagtgaccct
cacatgatggcctacaacattcccttagcctactgcttcaccatcggcataacattcttt
atcaccggcatcgtcctcgtttacagcatgtccaagtcctttgagaggagtttccgtgtg
ttcaagtctcagggaaacatggccataaaggtcttctgctcctgggatttcaaagtcagc
aagaagatgtctatcaggatgcagtcggagaacatcaccacccagctcaaggagctgttg
tcggaggtgaaaggcggagaggaggagaagggcaggctgtctgggatggcggtgcacctg
ctagcatggagcatttctctggggagcaccttcttctgtgcactcggcatccactgcttt
gccaagtacatgcacctgaggagacttgaggatgcagagggggaggtcagtgtggtgcat
gaggctcgtctgctggctctgcctggggttgtgtcctgtgggaacctcctcctccctggt
ctcttcaacctcgtgtcttggatggagaacttcaactcgcccattgtacgtctctatgtt
tccatcttcaggaacctactgctgaaggtgagcattcttggcgtactgtgctaccattgg
ctggggaaaattgcagctgaaccagagcaacatggtctgcagtgctgggagagctttgtt
ggtcaggagctgtatcgtttcctgctcgtggatttcatattcacggttctctacacagtc
ttcggagaatttatttggaagcggttttctcaaggagtgctgaggagaaggaggaagcca
gtgtttgatatcgcccgtaacgtactcgagctcatctatgggcaaaccctcacctggcta
ggcttgctcttcactcctttactgccagctgtgcagatcctcaagctgttgttgttgttc
catatgaaaaagagcagcctactggtgaactgccaggcatccaggaagccgtggagagcc
agtcagatgagcaccctcttcatctctctgctgtgtttcccctctttcctcggggccacc
gtgtctgtgacctacaccatatggacgattaagccctcctctggctgtggtcctttcagg
aacctccccttcatcttccactcgggcaaacagtgggcccaggagctgaagagtaccaac
cacaagctggcctggctcaactgggtacacagctgcttggtggagaaccccctcttcctg
ttcctgttggcaggtgtctttctaatggtcatttacattcacacccaagttttagacggc
caaaggaaaataatcagtctgctacaggagcaaatagaaaatgaggggaaggacaagaag
ttcttaattactagtctgcacgccatccatgagaagaggcagtatccactgtccccttcc
tccaggcctcagccacagggcagtgaggttgaatatgttttagtggaagattaa
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