Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402212
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Entry
139402212 CDS
T10872
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139402212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
139402212
NCBI-ProteinID:
XP_071002421
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLAANTASIQMTF
LRLLSTEANQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMEDG
CTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagctgttgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt
ggggcccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggagataagggcagccccgggccccgtggcagagatggtgagcctggtacc
cccggtaaccccggcccccccggacctccaggacctaacggaccccctggccttggagga
aacttcgctgctcagatggcgggaggatttgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
tcgttgggtccccgtggtccacccggaccctctggtaaacctggagatgatggtgaggct
ggcaaacccggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctccaggaccaatgggaccacgcggtctgcccggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtcctgctggtgctccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggaccccgtggagagtcaggaacc
cccggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggagga
tctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggacctctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagccggt
ccacaaggagcacttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgctgctggacctcttggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaacggtgagcctgggaaggga
ggagaaaaggggcttcttggtgccccaggtctgaggggtcttcctggaaaggatggtgag
actggagctgctggaccacctggccctgctggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgacggacccaagggagcgatcggaccaggt
ggcgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggggcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcctggcccagct
ggtcccaacggagagaagggtgaatctggtccatctggaccttccggtgctgccggtgcc
cgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagccaaaggagagcagggagagggtggccagaag
ggagacgctggtgcccctggaccccagggaccctctggagctcctggaccttccggacca
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggtgctgccggcagagtcgggccccctggtcccaacggtaaccctggtgctgct
gggccctctggccctgctggtaaagatggccctaagggtgtgcgtggagacggtggaccc
ccaggcagacagggagacgctgggctgcgtggagccgctggatcccctggagagaaggga
gatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
ccaggaccctctggagagcctggtaaacaaggagctcctggtggaagcggagaccgtggg
ccccctggcccagtgggaccccctggactgactggacccgctggagaacccgggagagag
ggcaacgctggttctgatggaccacctggtagagatggatccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggctccccaggtgctaatggttcccccggc
cctgtcggccccaccggcaagcaaggagacaggggagaggctggagctcaaggacccgct
ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac
aagggtgaggctggagagggtggtgagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcccggacctcccggtcaatctggagaccagggtgcctctggacctgct
ggaccaagtggatcaaggggacctcccggacccgttggtccctctggaaaggatggttcc
aacggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggt
ccctctggtccacctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatg
gagaccggagagtcctgtgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgagagtctggcagccaacacggccagcatccagatgaccttc
ctgcggctgctgtccaccgaggctaatcagaacctcacctaccactgcaagaacagcgtg
gcctatatggacggggccacggggaacctgaagaaggccgtgctgctccagggctccaac
gacgtggagatcagagctgagggcaacagccgcttcacctacaccgttatggaggacggc
tgcacgaaacataaaggaacgtggggaaagacagtgattgagtacagatcccagaagacc
agccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagagttt
ggtgttgacgtcggcgcagtttgcttcttgtaa
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