KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402218
Entry
139402218         CDS       T10872                                 
Name
(RefSeq) exosome complex component CSL4-like
  KO
K07573  exosome complex component CSL4
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    139402218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocla03019]
    139402218
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     139402218
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     139402218
SSDB
Motif
Pfam: EXOSC1 ECR1_N SPK
Other DBs
NCBI-GeneID: 139402218
NCBI-ProteinID: XP_071002426
LinkDB
Position
Unknown
AA seq 194 aa
MSPMKLCVPGDRLCSTEDCMPGTGVYLRHGYIYSSLAGYVLRKNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTCINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDRVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtctcccatgaagctgtgtgttccaggtgataggctatgcagcacagaagactgtatg
cccggtactggggtgtacctacgacacggctacatctactcctcgctagcaggctatgta
ctcaggaagaacgaaggagaggagctaccagtcatctcggtggtgagagaaaccgaggct
cagctactaccagatgtaggagccatagtgacctgtaaggtgacctgtatcaaccccagg
tttgccaaggtccacatcctctacgttggttccacgccactgaaggaccgttttagagga
accatccggaaagaagatgtacgagcaacagaaaaagacagggtggagacgtataaaagc
ttccgtcctggagacatcgtcctggctaaagtcatctccctgggagacgtccagtccaac
tacctgttgaccacagcagagaacgagctgggggtggtggtagcccacagtgaagcagga
gcccagatggtgcctatcagctggtgtgagatgcagtgcccacggacacacgccaaagag
ttccgcaaggtggccagggtgcaacctgagtacctgcaggcctga

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