Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402395
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Entry
139402395 CDS
T10872
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2-like
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139402395
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139402395
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
139402395
NCBI-ProteinID:
XP_071002492
LinkDB
All DBs
Position
1:complement(29082056..29113335)
Genome browser
AA seq
1822 aa
AA seq
DB search
MMKNKNKKQEDEGSTQSNASSNSASEESNHSGLESGSQSESEQGRERRRLHHSGESNSSS
ESGSQSGSESESQQASAEVKDRQPVKKKDNLSDVKKMWEEHPDVYGVRRSNRSRQEPARL
NIGAGGSSDSEGESPKRKASRQKKKENTWKSDESDDDDDDDDEEDASSADSEQEEKKVRS
RRLPARRPKNKSSTVKKQQPPKGRKTRKQESSVEEDDDDDDDDDDDDDDDEDTPKRQTRR
RVSAKVSYKEDQNDFETDSDDLIEMEGAEVEPEDDSETIEKIMDTRTGKKGACGASTTQY
AVEENGDPGADFDPEKDEGEIHYLIKWKGWSYIHNTWESIDSLTQQKVKGLKKLDNFKKK
NDELTAWLSKASPEDSEYYNCQQELTTDLNKQFHILERVIATKTGKTQGLSDFPSHSHKN
GASSNEPEYLCKWMGLPYSECSWEDGALLGKKFQHCIDGFINRNSSKTVPSKDCKVLKQR
PRFVALKNQPSYIGDENLQLRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISFLS
YMFHQHQLYGPSLVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVMSRKSIRDYEWVCHQT
KRIKFNALITTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIEFRSNHRLLI
TGTPLQNSLKELWSLLHFLMPDKFENWEDFESEHGKGTDNGYQSLHKVLEPFLLRRVKKD
VEKSLPAKVEQILRVDMSAVQKQYYKWILTRNFRALQKGTRGSSSGFLNIVMELKKCTNH
GFLIKQPEEECDTPQEHLQALVRGSGKLVLLDKLLTRLRDRGNRVLIFSQMVRMLDILAE
YLALKRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIF
DSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDT
TGRTVLDNNSGNSNSNPFNKDELTAILKFGAEDLFKEAEGEETEPTEMDIDEILRLAETR
ESDQGSSATDELLSQFKVANFSNMEESAPEMVERMVPDWDDIIPEDQRRRLEEEQKQKEM
EDIYMLPRSRSSNKRAQANDSDSDVGSKLKHRSSGSESETDDSGDDKKPKRRGRPRARKN
NVEGFTDAEIRRFIKAYKKFGAPLERLEGIARDSELVDKSQADLKRLGELIHSSCVTAVQ
EHEEHLRENPSEAKGPGKRRGINIKISGVQVNAKSIIQHEEEFEPLHKAVPANPTERNQF
QLTCRVKVPHFDVDWDLQDDTQLLLGVYEHGYGNWDLMKTDPDLKLADKILPDDPEKKPQ
GKQLQARSDYLLKMLKKEADCKDVTKEEAKVKKRKPRVKKENKAPKDEQGNDISSPRMSD
NPSEEGEVRDDGTEKTPTKKRQKKKDNKENKEKHGTPKKEKDADKDKKRPKPKKEKAKGS
KGKKPQGPVHITAGSDPVPIGEEDDELDQENFSICKERMRPVKKALKQLDKPDEGLSVQE
QLQHTRTCLLKIGDRITECLKAYSDPEHVKTWRRNLWIFVSKFTEFGARKLHKLYKMAQK
KRSREEEKEHRKKGDDPSGRKKTFRAEASGSSRDSTGTQPSSKSHPGMPHPSPTSPHGPH
REGYNQSNKRHFGNDDRGDWQRDRKYNYPGNSNQSWQSERHHPYDAHRYKDHHYGDRRPR
EDSYRSSSSSYRSGGSSSSPRKRPYDQYDSDREHRDRRAYYDRHPDSKRRRGDDFRPPQD
FRGSGGHPQDFRVRMPEHRGPPGPAGPEHFTRPYPDNKPPPLLDPRSPQAQKSPQDSRSP
TAERTAEQKAAAADLNWNNRKT
NT seq
5469 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaataagaataaaaagcaagaagatgaaggttcgactcaaagcaatgcatca
agcaattcggcctcagaagaatcgaaccactctgggttggagtctgggagtcagtcggag
agtgagcagggcagggagaggagaagattgcaccactcaggagagtccaacagctcttct
gaatctgggagccagtccgggtctgagagtgaatcccagcaggcctcggcagaggtcaag
gacagacaaccagttaaaaagaaagacaatctgtcagatgtgaagaagatgtgggaagag
catccagatgtctatggggtcaggcgatcaaatcgcagtagacaagaacctgctcgtctc
aatattggagctgggggtagcagtgactccgaaggtgaaagtcctaaaagaaaagcatca
cgacagaagaagaaagaaaatacctggaaaagtgatgaatcggatgatgatgatgatgat
gatgatgaggaggatgccagcagtgcagacagtgagcaggaagagaaaaaagttagatcc
agacgacttcctgctagaagaccaaagaacaaatcatctacagtcaaaaaacagcagcct
ccaaagggaaggaaaaccaggaaacaagagtcatctgtggaggaagatgatgacgacgac
gacgatgatgatgatgatgatgatgatgacgaagataccccaaagagacaaacccggcga
agggtgtctgctaaagtcagttacaaggaggaccaaaatgactttgagactgactctgac
gacctgatagagatggagggagctgaggtggagccggaagatgacagcgagaccattgag
aagatcatggataccaggacaggcaaaaaaggagcctgcggggcttccactacccagtat
gctgttgaggaaaatggggacccaggagccgactttgacccagagaaggatgagggagag
atccattacctgatcaagtggaaaggctggtcctacatccacaacacctgggagagcatc
gactccctcactcaacagaaggtcaagggactcaagaaactagataactttaagaagaag
aacgatgagctcactgcttggttgagcaaagcatcccctgaggattcagaatattacaac
tgccagcaagagctaaccactgatttaaataagcagttccatattctggagagagtcatt
gcgactaaaaccgggaagacacagggtctctcggattttccttctcacagccacaagaat
ggtgcttcttccaatgagccagagtacctgtgtaagtggatgggcctgccttattcagag
tgcagctgggaggatggagctctgctggggaagaagttccagcactgtatagacggcttc
atcaacaggaactccagtaaaacagtcccctccaaagactgcaaagtgttgaaacagagg
cccagatttgttgcactaaagaaccagccatcgtacattggggatgagaacctgcagctg
agagattatcagttagatggactgaactggctggctcactcctggtgcaggtgcaatagt
gtgatcctggctgatgagatgggtctggggaaaaccatccagaccatctcgttcttgtcc
tacatgttccaccagcaccagctgtatgggccctccctggtggtggtacccctatccacc
ctcacctcctggcagagagagtttgacacctgggcccccgatatgaacgtggtggtctac
ttgggagacgtgatgagcaggaaatcgatccgtgactatgagtgggtatgccatcagacg
aagagaataaagttcaatgcacttataaccacgtatgaaattctactgaaagacaagggg
gtgttggggaacataaactgggctttcttgggtgtggacgaagctcacaggctaaagaat
gacgactccctgttgtacaaaaccctgatcgagttccggtccaaccacagacttcttatc
acagggacaccactgcagaactctctcaaagagctgtggtcccttctgcacttcctcatg
cctgacaagtttgaaaattgggaagattttgaaagtgagcatggtaaagggactgacaat
ggctaccagagccttcacaaagtccttgagcccttcctcctgaggcgtgtaaagaaggat
gtggagaaatccctgcctgccaaggtagaacagatcctccgtgtggacatgtctgctgtg
cagaagcagtactacaagtggattctgaccaggaacttcagagccctgcagaaaggcacc
cgaggcagctcctctggcttcctcaacatcgtcatggagctgaagaagtgcactaaccat
ggtttcctcatcaaacagcctgaggaagagtgtgacactccacaggagcacctgcaggcg
ttggtgaggggcagtgggaagctggttcttctggacaagctactgaccagacttcgggac
aggggcaacagagtcctcatcttctcccagatggtgcgcatgttggacatcctggctgag
tacctggccctgaagcgctacccattccagcgcctggatggctccataaagggagaaata
cgaaaacaagcacttgaccactttaatgctgaaggttctgaggacttctgtttcctgctg
tccacaagagctggaggtttgggtatcaaccttgcctctgcagacactgtggtcatcttt
gactctgactggaaccctcagaacgacctgcaggctcaggccagggctcacaggattggc
cagaagaagcaggtgaatatctatcgcttggtcacaaagggatctgtggaggaggacatt
attgagagagccaagaagaagatggttttggaccatcttgtaattcagagaatggacacc
actggtcgaactgtattggataacaactccggaaattcaaactccaacccattcaataaa
gatgagctgactgccattctgaagtttggagctgaagatctgttcaaagaggcagaagga
gaggagactgaacctacggagatggatattgatgagatcttgcggttggctgaaaccaga
gaaagtgaccagggatcaagtgccacagatgagcttctctctcagttcaaggtggccaac
ttctccaacatggaggagagtgctccagagatggtggagcggatggtgcctgactgggac
gacatcatcccggaggaccagcggcggaggctggaggaggagcagaagcagaaggagatg
gaggacatctacatgctgcctagaagcaggagctccaataagagggcccaagccaacgac
agtgacagtgacgttggctccaagctgaagcaccgctcctcgggctccgagagcgaaacg
gacgacagcggcgatgacaagaagccaaagaggagaggcaggcccagagcccgcaagaac
aacgtggagggttttactgatgcagagatccgcaggttcatcaaggcttataagaaattt
ggagctccgcttgaaaggctggagggcattgcccgggactcagagctggtggacaaatcc
caggcagacctgaagagactgggcgagctgatccatagcagctgtgtgacggctgtccaa
gagcatgaagagcacctcagagagaatcccagtgaagccaaaggccctgggaagcgcaga
ggtattaacatcaagatctcaggagtgcaggtcaatgccaagtccatcattcagcacgag
gaggagtttgagccactgcacaaagctgtgccagctaatcctactgagagaaaccaattc
caactgacctgcagagtgaaggtgcctcactttgacgtggactgggatctgcaggatgac
actcaactgttgctgggggtctatgagcatggctatggaaactgggatctgatgaagacc
gaccccgatctcaaactcgcagacaagattctcccagatgacccagagaagaaacctcaa
gggaagcagttgcaggccagatcagactaccttctgaagatgctgaagaaagaagcggac
tgtaaagatgttactaaggaggaggccaaagtgaagaagaggaagcctcgggtgaagaaa
gagaacaaggcccctaaagatgaacagggcaatgacatttcctccccccgcatgtcagac
aacccctcagaggaaggggaggtgagggatgacgggactgaaaaaactcccacaaagaag
aggcagaagaaaaaggataacaaagagaacaaagaaaaacacggaactcctaaaaaagag
aaggacgcggacaaagacaaaaaacgtccgaagccaaaaaaagaaaaggcaaaaggatct
aaagggaagaagccccaggggccggtccacattactgctgggagtgaccctgttcccatc
ggagaggaggacgatgagctggaccaagagaacttcagcatatgtaaggagcgcatgagg
ccggtgaagaaggccctaaaacagctggataagcctgacgagggcctgtctgttcaggag
cagctccaacacacacgcacctgcctgctgaagataggagaccgcatcactgagtgcctt
aaagcctacagcgacccagagcatgtcaaaacatggcgtcggaacctctggatttttgtg
tctaagttcacagaatttggagcgaggaagcttcacaagctgtacaagatggctcagaag
aagcggtctcgggaggaggagaaggagcatagaaaaaagggggatgacccgtcaggcagg
aaaaagactttccgagcagaggcgtctggttccagtcgagactccaccggcacccagccg
tcgtccaagtctcatccaggcatgccccacccctctccaacgtccccccatggtccccac
agagaaggctacaaccagtccaacaagcgacactttggaaatgatgatcgaggagattgg
cagcgagatcgtaaatacaactaccctggaaatagcaaccagtcctggcaaagcgagcgg
catcatccatatgacgcccatcggtataaggaccatcactatggtgaccgtcgtccgcgt
gaagactcctaccgcagcagctctagtagttaccgtagtggcggcagcagcagctcccct
cggaagaggccgtatgaccagtatgacagcgaccgagaacacagggaccgtcgtgcctat
tacgacagacatccagactcaaagcggagacgcggcgatgacttccgtcctccccaagac
ttcagggggagtggaggccatccccaagacttcagggtgaggatgccagagcataggggg
cccccggggccagcagggccagaacacttcacccggccctatccagacaacaaacccccc
cccctgctggacccacgctccccacaggcgcagaagtccccccaggactcacgctcgcca
actgcagagcggactgcagagcagaaagcagctgcggctgatttaaactggaacaacagg
aagacatga
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integrated database retrieval system
