Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402454
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Entry
139402454 CDS
T10872
Name
(RefSeq) cohesin subunit SA-1
KO
K06671
cohesin complex subunit SA-1/2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
139402454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139402454
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
139402454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_SCC3-SA
STAG
SCD
Cnd1
Cnd3
Motif
Other DBs
NCBI-GeneID:
139402454
NCBI-ProteinID:
XP_071002511
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MITSELPVLQDSSNESGAADTVSLSVSVSELEDPTDTKGKKKRGRPGRPPAANKKPRKSP
AEKATGGAKGRKANGVPQTNGEGGDPVTLFEVVRMGKSAMQSVVDDWIESYKQDRDIALL
DLINFFIQCSGCKGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPLWKKFRYNF
CEFICVLIRQCQYSIIYDEYLMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVAL
NLSIHQDNTQRQYEAERNKMAGKRANEKLELLLQKRKELQENQDEIENMMNSIFKGIFVH
RYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQNLY
TNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLITLILQGSEDALSNEDCENVYH
LVYSAHRPVAVAAGEFLHRKLFSRHDPQAEEELAKRRGRSSPNGNLLRMLVLFFLESELH
EHAAYLVDSLWESSQELLKDWECMTELLLEEPVQGEEVLSDRQESSLIELMVCTIRQAAE
AHPPVGRGTGKRVLTAKERKTQIDDKNKLTEHFIMALPMLLSKYQADSEKVANLLQIPMF
FDLDVYSAGRMEKHLDALLKQIRLVVEKHIETDVLEACSKTYSILCSEEYTIMNRVDIAR
SQLIDEITDRFTHSVEDLLQEAEEADDDDIYNVLSTLKRLTAFHNAHDLTRWDLFGSCYR
LLKAGIEQGAMPEQIAVQALQCSHYSILWQLVKITEGTPSKEDLVALRRVVKSFLAVCQQ
CLSNVNTPVKEQAFMLLCDLLMVFSHQLVSGGREGLEALVFNPDSTLQNELLTFILDHVF
IDQDDENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDMPAAADIFKHYMKYYN
DYGDIIKETLSKTRQSDKILCAKTLILSLQQLFNELLQDQGPTLDRTSSHVSGIKELARR
FALTFGLDQIKTREAVATLHKDGIEFAFKYQNPHGAEFPPPNLAFLEVLSEFSSKLLRQD
KKTVHSYLEKFMSESMSERREDVWLPLISYRNSLLTGGEDGDRMSVTSGASSKTSSIRSK
KGRTPIHKSKRIEEESSVEASWLRGNDSLQTPGALTTPQLTSTVLRENPRQAADTHLPDH
DSEPGSENDYVHNPQMQMSWLGQQKMEDSRKDRTAMNYMKARNQTVRQTVRGLMEDDAEP
IFEDVMMSSRGQLEDMNEEFEDTMVIDLPPSRNRRERAELRPDFFDSAAMIEDESGFTMP
MF
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgatcacctctgagctgcctgtcctacaggactcgtccaatgagagcggagcggcagac
acagtgagtctgagtgtgagtgtgagtgagctggaggacccgacagacactaaaggcaag
aagaagagagggaggcctggcagaccaccagcagccaataagaagcctcggaagtcccca
gcggagaaggctacaggcggggctaaagggaggaaggccaatggggtccctcagaccaac
ggcgagggaggagaccccgtcactctgtttgaggtggtcagaatgggaaagagtgccatg
cagtctgtggttgatgactggatcgagtcgtacaagcaggacagagacatcgccttactg
gacctcatcaacttctttatccagtgttctggctgcaaaggcacggtgcgcatcgagatg
ttccggaacatgcagaacgcggagatcatcaggaagatgacagaggagtttgacgaggac
agtggggactaccctctcaccatgcccgggccgctgtggaagaagttccgctacaacttc
tgtgagttcatctgcgtattgatacgtcagtgccagtacagcatcatctacgatgagtac
ctcatggacacggtcatatccctcctcacgggactatctgactcacaggtcagagctttc
agacacaccagcacactggcagcgatgaagttgatgacagcgttggtgaacgtggcgttg
aacctcagtatccaccaggacaacacccagagacagtatgaggctgagaggaacaagatg
gctggaaaacgagccaatgagaagctagagctgctgctgcagaagaggaaggagctccag
gagaaccaggatgagattgagaacatgatgaactctatcttcaaaggaatctttgtccac
cgctacagggatgctatagctgagatcagagctatctgtattgaggagattggagtttgg
atgaagatgtactctgacgccttcctcaacgacagctacctgaaatatgtaggatggacc
ttacacgaccggcaaggtgaggtccgtctgaagtgtctgaaggctctccagaacctgtac
accaacagagaactgtttcctaaactggagctgttcaccaaccgcttcaaggaccgcatc
gtgtccatgactctggataaggagtatgacgtggctgtggaggctattagactgatcact
ctcatcctgcagggcagcgaggatgcgttgtccaatgaggactgcgagaatgtctaccac
ctggtttactccgcccacagacctgtcgccgtggcagcaggagagttcctgcacaggaag
ttgttcagcagacatgacccccaggcagaggaggagttggctaagaggagagggaggagc
agccccaacgggaacctcctccgcatgctggtgctgttcttcttggagagtgagcttcat
gaacatgcagcctatctggtggactctctgtgggagagttctcaggagctgctgaaggac
tgggagtgtatgactgagttactgctggaggagcctgtacaaggagaggaggtgctgtca
gacagacaggagagttccctgatagagttgatggtgtgtaccatccggcaggcagcagag
gctcacccacccgtcggcaggggcactgggaagcgtgttctcacagcgaaggagaggaag
actcagatagacgacaagaacaaactgacagaacacttcatcatggccctgcccatgctc
ctgtctaagtaccaggccgactctgagaaggtggctaacctgctacagatccctatgttc
tttgatctggacgtgtacagcgctgggcgtatggagaagcacctagatgccttactgaag
cagatccgcctggtggtggagaaacacattgagacagacgtgctggaggcctgcagtaag
acctacagcatcctgtgttctgaggagtacaccatcatgaacagagtggacatcgcccgc
tcgcaactcatcgacgagataacggaccgcttcacacactccgtagaagacctgctgcaa
gaggccgaggaggctgacgatgacgacatctacaacgttctgtctaccctcaagagactc
acggccttccacaatgctcatgacctgacgcggtgggacctgtttggtagctgctacagg
ttgttgaaggctggtattgagcagggggccatgccagagcagatcgctgtccaggccctg
cagtgttcccactactccatactgtggcagctggtgaaaatcacagagggaactcctagt
aaggaggacctggtggctctgaggagagtggtgaagtccttcctggctgtctgtcagcag
tgtctgtccaatgtcaacacacctgtcaaagaacaggccttcatgttgttgtgtgacctg
ctgatggtcttcagtcaccagttggtgtctgggggcagagaaggactggaggccctggtg
ttcaacccagacagcaccttacagaacgagctgctcaccttcatcctggaccacgtcttt
atagaccaggacgatgagaaccagagcatggaaggcgacgaggaggatgaagccaataag
atagaagctcttcacaagaggagaaacctgctcgcagccttcagcaaactcatcatctat
gacatcgtggacatgcctgctgctgcagacatcttcaaacactacatgaagtattataat
gactatggtgatatcatcaaggagactctcagtaagaccagacagagtgataagatcctc
tgtgccaaaaccctcatcctcagtctgcaacagctgttcaacgagcttctccaggaccag
ggtcctactctggacagaacatcgtctcacgtcagcggcatcaaggagttggcccggcgc
ttcgccctcaccttcggcctggaccagatcaaaaccagagaggctgtcgctacgctgcac
aaggatggtatagagtttgcctttaagtaccagaacccccatggtgcagagttccctcct
cctaacctggccttcctagaggtcctctcagagttttcctccaaactgctgcgacaggac
aagaagactgttcactcgtatctggagaagtttatgtcggagtcgatgtcggagcgtcgt
gaggacgtgtggctgcccttaatctcctaccggaacagtctgctaacaggaggagaggat
ggggaccggatgtcggtaacgtcaggcgccagcagcaagaccagctccatccgcagcaag
aagggacggacgccaatacacaagagtaaacgcatcgaggaggagagtagtgtggaggcc
tcctggcttcgtggtaatgacagcctccagacaccgggggcgctaaccacccctcagctc
acctccaccgtcctcagagaaaacccacggcaggcggcggacacacacctacctgaccac
gactctgaacctggctcagagaacgactatgtacacaatccccagatgcagatgtcttgg
ctaggccaacagaagatggaggacagcaggaaggatagaacagccatgaactacatgaag
gcccgcaaccagactgtcagacaaactgttcgtggtctgatggaggatgacgcagagcca
atctttgaggacgtcatgatgtcatcgcgaggtcaactggaggacatgaatgaggagttc
gaagacaccatggtcatcgacctgcctccctccaggaacaggcgtgaaagggcggagctc
agaccagacttcttcgactcagcagccatgatcgaggacgagtcgggtttcaccatgccc
atgttctga
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