Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402522
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Entry
139402522 CDS
T10872
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
139402522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139402522
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139402522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_EML_2
EIF3I
Beta-prop_WDR3_1st
WDR55
Beta-prop_HPS5
WD40_Prp19
Beta-prop_WDR36-Utp21_2nd
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
139402522
NCBI-ProteinID:
XP_071002617
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDTIDDKEFDIPQVDTPPTLESILNEPEDEEEPFILEDT
CLLNTENIDAHSCETSSLASSDSGDRTHLKRKRKTVELSTTVHGSVLRHSILKGISAQIV
SAADKVDAGLPTAVTVSGVIVVGTSHGLALVFDLNQALRLCLGSTATGAEYGAVSALSIN
HDCTRLLCGFAKGHITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELAFRRLMGMRTCESRCLFSGSKGEVCNVEPLLTAPDLKDHPITQYSLLAMASLTKILV
IGLKPSLKVWMTFPYGKTDPTSVPQLAWQFVPVQKVVNPVLAFCRGDTVHFLLVKKDETG
TIHVIKQRQLQLNCDIISLNWINSRTLVVMDSGEKLRVVDRPSQEELESLDVAEVQLVYN
SSHFKSLATGGNVSQALALVGEKACYQSVCSYAGQMVLLGTKSAHILTLRNWRERVDCLL
KQERFVEALSLAWSFHEGTAKAVLGLFGDPAKRKGVVADKMIEILFQYVERSVKKCPEHG
KIQIMEQHFQDMVPVMVDYCLQLQRTDLLFNQLYTRLVENCVARGVFLESLEPYIVSERL
GCVTAPVMRDLLTHLQDNNMMDSVENCLIHLDITSLDIQQVVQMCWDNRLYDAMIYVFNR
GMNDYITPMEKLFQVIGPPLREGRALTDEQVVMGNKLLVYISCSLAGRAYPLGDIPEDLV
SQVKNQ
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatcaccagatacacgcagtttggtttctgcgtcatcccagctcaatttaatg
gaaatagatacgatcgacgataaagagtttgacattccccaagttgacaccccgcctaca
ttggagagcatcctgaatgagcctgaggatgaggaggagcccttcatcctggaggacacg
tgtctgctgaacacagagaacatcgacgcccactcctgtgagacctcctcactggccagc
tccgacagcggtgaccgcacacacctcaaacggaagaggaagacagtggagctcagcact
acagtccatggctctgtgctccgacacagcatcctgaaaggcatctctgctcagatagtc
tcagccgctgacaaagtagatgctggactgccaactgcagtaactgtgtctggtgtgatc
gtagtgggaacgtctcatggcctggctctagtgtttgatctaaaccaggctctccgtttg
tgcttgggaagcacggcgacaggggcggagtacggcgccgtctccgccctcagcatcaac
cacgactgcacccgcctgctctgtggcttcgccaagggacatatcaccatgtgggatctg
gccaatgggaagcttctgcgaaccattaccgacgcccacccacccggcaccgccatctta
catgtcaagttcaccgatgaccctacgctggcagtgtgcaacgacagcggtggctctgtg
tttgagctggctttcaggaggttgatggggatgcgtacatgtgagtctcgttgtctgttc
agtggctctaagggagaggtgtgtaatgtggagcctctccttaccgccccggacctgaag
gatcaccccatcacacagtactctctcctggccatggcctctcttactaagattctagtg
atcggactgaagccttctctcaaagtgtggatgacatttccctatggcaagactgacccg
accagtgttccccagctggcctggcagtttgtccccgttcagaaggtggtcaaccccgtc
ctggcattctgcagaggagacaccgtacacttcctgctggtgaagaaggatgagaccgga
accatccatgtcatcaagcaaagacagctgcagctgaactgtgacatcatcagtctgaat
tggatcaacagtcgtaccctggtggtgatggacagcggggagaagctgcgtgtggtggac
cgacccagccaggaggagctggagagcttggacgtggctgaggtgcagctggtctacaac
agcagccattttaaatcgctggcaacggggggaaacgtcagccaggcactggccctagta
ggagagaaggcctgctatcagtctgtctgcagctacgcaggacagatggtgttactgggg
accaagtcagcccacatcctgactctgaggaactggagggagcgggtggactgtctgttg
aaacaggaacgttttgttgaggctctgtccttggcctggtccttccatgagggcaccgcc
aaggctgtactggggctgtttggggacccagcaaagaggaaaggtgtagtggcagacaag
atgattgagattctgttccagtatgtggagcgctcagtgaagaaatgtccagaacacggc
aagatacagatcatggaacaacatttccaggacatggtgcctgtcatggtagattactgt
ctgcagctgcagaggacggacctactgtttaaccagctatatacccgcctggtggagaac
tgtgtggctcggggggtcttcctggagagtttggaaccctacatcgtgtcggagcgtctg
ggctgtgtgaccgctcctgtcatgagagacctgctgacccacctacaggataacaacatg
atggacagtgtagagaactgtctgatacatctggacatcaccagcctcgacatacaacag
gtggtccagatgtgttgggacaaccggctgtatgatgccatgatctacgtgttcaacagg
ggaatgaatgactacatcacccctatggagaaactcttccaggtcattggccccccgctg
agagaaggcagggccctcacagatgaacaggtggtgatgggtaacaagctgctcgtttat
atcagctgctctctggcaggccgggcctatccactaggagacatcccagaggacctggtg
tctcaagtcaagaaccag
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