Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139402728
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Entry
139402728 CDS
T10872
Name
(RefSeq) zinc finger CCCH domain-containing protein 13
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139402728
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
139402728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
139402728
NCBI-ProteinID:
XP_071002732
LinkDB
All DBs
Position
Unknown
AA seq
1926 aa
AA seq
DB search
MSKIRRRVTVENSKTISDSSSSQTTTTPSRRPSVFERLGPSTGSNAVETNCRNWLKTGNC
SYGNTCRYTHGTQPRGKGFSGSFSRSAERPTGDLRERMKNKRQDVESDATKRDPEEPTSP
TARQRDSSRGRHREKEDIKITKERSPASEEETTEWEANREDSDNGDYDYELSLEMKRQKI
QRELMKLEQENMEKREEIVIKKEVPEPTTKTRTTIISKTSPERSSSRGSPSSRKSSGSPK
HTKGPKASGSRKKEKKTSVSSSASATARSSKGGHGKKKGPRTPSPPPPVLPLVNPVVAAG
GKKHKGKHKNKEKCEEKPPKEGKERGRDVEKHKEKKEKRRDRSDSSHKAKRSVMSEERSG
SVSSPSRDREASPSARKNKSTSPKVASQKTLAPASPPHRSPPPRHKRTPTPTRHHSPSSH
SGSSAQRHSPSPRRRRSASPTYNREPPAASSPPGQRCSSRSPAASRDTSSPQRRTSPGGR
NHSRGRERGRSERGRSPPAQEHRHERRDESRGKREKDGSRDDRDYEAAETSSSRDAARED
RETKEGRERRGDGRSDRRGDSTSTSRDPTRDRDRDTKDSTREPRTTETTSTRSGRDPLEY
REREREREREKEKERERERGEREKTDRKEEAVPEEGRGYGRGHGREEGGRTEGKGETRTE
SRAERPGRGRGREADASDKVSSGSTRNARGSQQESGGHDGWESRSGGGFREKSAERSTDR
GAERGGAERGGGAERGGVDRGGAERDRYDGDRRGGEQATGRDSSYDRRGGHTDRGDRREN
REREQRASSPGRHPARGEEPDREETRGRDERRGEEKGGDRREDRAREREREREREREKER
EREKEKEREAERERVREREREREREREKEREREKEKEREKEREREREREEREREREERDR
ERKEREREREREREREREQRERERQREWEEREKGRDERRERTRDEPRDDRSVRDSHEDRK
TSRKRHRVETTPSPTRPSPKRARDATPGDGEEYNSPEEKSVEKHRLLSQVVLPPQDPLLR
SPPSTSVAEDAKPSRWKDEERRGGGDKREGRSRRNEEADARGDRGGAGRGGERRGEHPSD
SSTPVSASGSDSRRGKERDGREPTPPPPPVALVTEDRDTPVPSGHEEGKKKTKSQKKGLK
KGRKEEAVAGGVSGAPERFTNPEPPSSMALSDAPPPPLLSPRKAPKKKALDKKRKRSRGA
ESDASEEEPGSSHLPPGKRNKRGPRTPPPAPKEALLSQRAMPHSVAEPLPQPVKMDANFS
DWSDEDVLERGGGSAPVKAPPTVPTERTPTEALPRRGGPRGGKERLERPVPLPIAPLLSQ
DPPMLLQTLPPQPLMSQPLLRKPPPEQKRSSSMGSNQSRASSRRLRSPSNESAHREDPQQ
GQGPGRPRRGHQLQGANSRDRERERERERERERERDRERERERGERERGPVLTEPPVVRG
EERKSRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSPESERQVQSRAGSYDGRERERERER
EREQFERERERKDLRQQQGPPGPLPPLQQQGQQRDWEPEGPREWGGRGREPLLMRGGNRE
QMRERDLRDMRGERERLLPEGLLQQHERERERERGGNRGIGRGGDHGNDRERERMLLMDL
PPHGDPKNRMDMRADRAEFSLLLPHEALGHGGMDQDKAGNSHHPVGGQIQEAEKQDSIDD
EDDAKADDAVSVVSGGEEYEPISDDELDEILADSAQKREDGQEEEKAPGPLDVIDVDWSS
LMPKQKQEPRAAGAALLRFTPGAVLLRAGVSKRLAGPELLERVREVCKKELDDPKDADKL
FEHDLGALNKAALNRKIERAGLLRNLGPCCKALCARRDMAIRRQLLKNEKGLAKQMYPSV
PVVDSELFQLSMRLFKKTVAAARSNQPPLGPPAGPEKADKGPPGLVPVTSPVAKPSTPQP
PEMCIS
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagataaggcggagggtaacagtggagaattctaaaaccatatctgacagcagc
agtagccagaccaccaccaccccgtctcgccggcccagcgtgtttgaaagacttggcccc
agcactggtagtaatgctgtcgagactaattgtagaaattggttgaagactgggaattgc
agttacggcaatacttgtcgctacacacatggaactcagccacgaggcaaaggatttagt
ggatcttttagcaggtcagcggagagaccaactggcgatctgcgagagaggatgaagaat
aagaggcaggatgttgaatcagatgctacaaagagagacccagaggagcctacgtccccc
acagccagacagcgagactcgtcccgaggccgccacagggagaaggaagatataaaaatc
actaaagagagaagccctgccagcgaagaagagaccacagagtgggaagccaaccgcgaa
gactcggataacggcgactacgactacgaattatccctagagatgaagagacagaagatc
cagcgggagctcatgaagttggagcaggagaatatggagaaaagagaggagattgttatc
aagaaagaggtaccggagccgaccaccaaaactaggaccactatcatatccaagacatcc
ccggagcgttccagctctagaggttccccctcctccaggaagtccagtggatcccccaaa
cacactaaaggacctaaagcttccggttctaggaagaaggagaagaagacctctgtgtcg
tcctctgcatccgccacggccagatcttccaaggggggccacgggaagaagaaaggtccc
cgcacccccagcccccctcctccggtgcttccgctggtgaaccctgtcgtggcagccggg
gggaagaagcacaaggggaagcacaagaacaaggagaagtgtgaggagaagccgcccaag
gagggaaaggagagagggagagatgtggagaaacacaaggagaagaaggagaaacgcaga
gaccggtcagacagctcccacaaggccaagcggtcagtgatgtctgaggaacgttccggc
agcgtgtcctctccttccagagaccgagaggcgtccccgtcagccaggaagaacaagtcc
acctccccaaaagtagcctcccagaagacccttgcgcctgcctccccacctcacaggtct
cccccgccccgccacaagcgcacccccaccccgacccgccaccactccccctcctcccac
tctggctcctcagcccagagacactctccttccccccgccggcgccgctcggcatccccc
acctacaaccgcgagcccccagccgcctcctcacctcctggccagaggtgttcctcccgc
tcccctgcagcctcccgggacacctcctctcctcagaggaggactagccccggaggacga
aaccactctcgggggcgtgagagaggacgcagcgagaggggaaggagcccacctgcccag
gagcaccgacacgagcgtcgagacgagagccgcgggaagcgagagaaagacggtagccgt
gacgaccgggactacgaggcggcagagacgagctcttctcgtgatgccgcccgtgaggac
cgggagacaaaagaggggcgggagcgccggggtgacgggcgcagcgaccgacgaggagac
tccaccagtacctccagggaccccaccagggatagagaccgggacaccaaggactcgacc
cgggaacccagaaccacagagaccacgtcaacacgctccggacgagaccctctggagtac
agggagcgagaacgggagagggagcgagaaaaggagaaagagagggagcgggagagagga
gagagggagaagacggacaggaaggaggaggctgtcccggaggaggggaggggctatggg
aggggccacgggcgagaggaaggagggaggactgaagggaagggggagacgaggacagag
agtagagctgagagacctggcaggggtaggggccgcgaggctgacgcatctgacaaagtt
tcctcaggctccacccggaacgcccgaggctcccagcaggagagcggtggtcatgacggc
tgggagtcacgtagcggcggaggcttccgtgagaagagtgcggagaggagcaccgaccgt
ggggcggagagaggaggcgcagagagaggaggaggcgctgaaagaggaggtgtcgacaga
ggaggagcggagcgtgaccgttatgacggagacaggagaggaggggagcaggcgactggg
agagactcatcctacgaccgaagaggtggtcacaccgaccgtggtgaccgcagagagaac
agggagagagagcaaagagcttcctctcctggtcggcacccagccagaggagaagagccg
gacagggaggagaccagagggagggatgaacgcagaggagaggaaaaaggaggggacagg
cgagaggacagggcccgagagagggagcgagagagggaacgggaaagagagaaggagaga
gaaagagagaaggagaaggagagggaggcagagcgggagagggttcgggagagggagcga
gaacgggagcgagagagggaaaaggaaagggagagggaaaaggagaaagagagggaaaag
gagcgagagagggaacgggagagggaagagagggagcgggagagggaggagcgagatagg
gagaggaaggagagagagcgggagagggaacgagagcgggagagggagcgagagcaaaga
gagagggagaggcagcgggaatgggaggagcgtgagaaaggaagggatgagcgacgggaa
cggactagggatgaaccaagggacgaccgctctgtccgagactcgcatgaagaccgcaag
accagccggaagaggcacagggtagagaccacacccagcccgactcgcccctctcccaag
cgagcaagggacgccaccccaggagacggcgaggaatacaacagccctgaggagaaaagt
gttgagaaacaccggctgttgagtcaggtggtactcccgccccaggaccccctcctgcgt
tccccccccagcacctctgtagcggaggacgccaagcccagccgctggaaggacgaggag
cgccgtggaggcggggacaagagggaggggaggagccgtcggaacgaggaggccgacgcc
cgcggagacagaggaggagcaggcagaggaggagagagacggggggagcacccctcagat
agcagtacacctgtctcggcctccggctcggactctaggaggggtaaagagagggacggt
cgggagcccacccctcccccgcctcccgtggccctggtcactgaggacagagatactcca
gtcccgtcaggtcatgaggagggcaagaagaagactaagtcccagaagaaaggcctgaag
aaggggaggaaggaggaggctgtggcaggaggtgtttcaggagctccagagaggttcacc
aacccagagcccccctcatccatggccctctcggacgcccccccgccccctctcctctcc
ccccgcaaagcgcctaagaagaaggcgctggacaagaagaggaaacgatcccgtggcgct
gagtcggacgcgtcggaggaggaaccaggctcctcccatcttcccccgggcaagaggaac
aagaggggtccccggacgcccccgcccgcgccaaaggaggctctgctatcccagagggcc
atgccacattcagttgcagagcccttgccacagcccgtcaaaatggacgccaacttcagc
gactggtctgacgaggatgtgctggagcgcggtggtggatcggcgcccgttaaggcaccc
cccacagtccccactgagaggactccgaccgaagctcttcccaggagaggaggtccgagg
gggggcaaggagaggttggagaggcctgttcccctgcccatcgcccctctgctgtcccag
gaccctcccatgttactccagaccctgcctccccagcccctcatgtcccagcccctgctg
aggaagcctcctccggagcagaagaggagcagcagtatgggaagcaaccagagcagggcc
tcatccagacgtctccgttctccctccaacgagtcagcccacagagaggaccctcagcag
ggccaaggaccaggccgacccaggagaggacaccagctccagggggccaactcccgagac
cgggaacgagaaagggaacgagaaagggagcgagaaagggagcgagacagggaaagagag
agggagcgtggtgagagagagaggggaccagtgctcacagagcctccagtggtgagggga
gaggagcggaagtcacgcatcgaccagctgaggagaggagagcccagtcgcagcacctcc
tcagaccggcaggactctcgcagccacagctccagacgtagctctcctgagtcagagcgg
caggtgcagtcgcgggccgggtcctacgacggcagagagcgtgagagggagagagagagg
gagcgggaacagtttgagagggagcgtgagcgcaaggacctccgacagcaacaggggcct
ccggggccactacctcctctccagcagcaggggcagcagagagactgggagcccgagggg
ccacgggagtggggtgggaggggccgtgaacccctcctcatgcgtggaggcaacagagag
caaatgagagagcgtgatctccgtgacatgcggggtgagagagagcggcttctgcccgag
ggtctcctgcagcagcacgaacgagagcgggaaagggagcgtggtggcaacaggggcatt
ggccgcggtggtgaccatggcaacgaccgggagcgggagaggatgctgctgatggacctg
ccgccacatggggaccccaagaacaggatggacatgagggcggacagggctgagttctct
ctcctgctcccccatgaagccttgggacacggcggcatggaccaggacaaagcaggcaac
agccatcaccctgtgggaggacagatacaggaagcagagaaacaggacagcattgacgac
gaagatgacgcgaaggcggatgacgctgtgtcggtggtgtctggcggggaggagtatgag
ccaatcagtgatgacgagttggatgagatcttggcggacagcgcccagaagagagaggat
gggcaggaagaagagaaggcgccaggtcccctggatgtgattgatgtggactggtccagc
ctgatgcccaagcagaagcaggagccccgggcggcaggggcagctctgctccggttcacc
ccaggggcagtgctcctcagggcgggcgtctccaagcggctggctgggcccgagctcctg
gagagagtcagggaggtctgcaaaaaggagctggacgaccctaaagatgctgacaagctg
tttgagcacgacctgggtgctctgaacaaggcagctctgaacaggaagatagagagggca
ggtctgctgaggaacctgggcccctgctgtaaggccctctgcgcccgcagggacatggcc
atcagacggcagctcctcaagaacgaaaagggcctggccaagcagatgtaccccagtgtt
cctgtggtggacagtgagctcttccaactcagcatgcgtctcttcaagaagactgtagcc
gccgccagaagcaaccagcccccgttggggcccccagcaggcccagagaaggccgacaag
gggccaccggggctagtaccggtaacttcaccggtagccaagcccagtacaccacagccc
cccgagatgtgtatctcctga
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integrated database retrieval system
