Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403141
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Entry
139403141 CDS
T10872
Name
(RefSeq) RING finger protein 17
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139403141
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139403141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TUDOR
Agenet
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
139403141
NCBI-ProteinID:
XP_071002951
LinkDB
All DBs
Position
3:complement(71133013..71162098)
Genome browser
AA seq
1660 aa
AA seq
DB search
MSDRSPRADNPNSVVCNICGIAYTLPEDEIVGNLPNVLLCSHIFCTTCLRSLEFNNVILC
PECKVESTLPEGGVEGLQVDSRIIGLIYTAKMNKMKRDRPRHHRVKSSSSPLEEDTKQGP
DVEKALKAIEEALSQASENMANLDNIHQTLVKGLMVQVKREKARLLMEIDEAMGRAFTIL
NRRKGALVAELTNMEQHFPSSRRELGRVEERMRALDTAMQKAKQVGQHPSLESYCDLEQL
LETLQASVDVQSFDLKCLSLGSGLSCIAQQDALGRSLKACLKINIGNAKILTDELIHRDR
ERPQEQAGPNRKAPLLPHSLNTREPSRPQQQQESQTMMRPPPPSTREHVPPHQEQESLRM
TRHTWGPSPIPGPLPLPSSSPVSDSGPNVIIEEIIEEIEQGGEGKDEVSLKSCHQVTTAS
SKTTASGFSVGVVPAHLSELQQASERQRAQRSSKKSQEDLPPVSQGKVFQEWVMVTHVVN
PNHFYIRHVAEQRACILLSKKINSLCSGERGLFTASDILETGSTVFVKWKEGMWCRATLT
ELFQRGHLDPVRSCPVPELHRVRVYFQDYGFCKGIALQSEEAGPDLFIRDMNERLRRVDV
AGQSEMSRWLPQAIKCSLKDIVPANLTKGWSAEAQDEFRRVVGSASVEMQVFGQERGALL
VDLKKAPMDSGSSNMPMSLREYLVFLELARFYSPVAWNAKTVPCGRRPLQFYLPVFPRTN
VELNAVVSHIDTPSHFYIQLVDNMEFLLLTAKLQECYSYDCPSRGTRGEDQDLEVYCPVL
DQACVARFDDKVWYRAHVIGIPGGRKVEVQFVDFGNNKILSVNDLRKIKDEFFALPAMAI
QCYLADVIPLEEGETWSKACIEKFKSLADQRLVTAVATEAGRRGRGLPVRLFETSDSSEP
LANIEDLLVNDQLACFKKGIKSKDTQAPVVDTTVWDPPLEGLLGESEPAPTSLGQETPEQ
DQEIQPYLMLPANLKDLRVRLTHVVSPGSFYVQLLQMDTQLKRVYELLKQEYARTEPQAI
EWKADMYCAAYNNGVWERGQLCSPVSLGCIAEVVRCDFGNKVKLHVNNLRPLLPSLVGCL
VLECSLSEIRPAGGRSTWTATACDFISYYLTGAMAIMTIKENTEQRPVLVSLYCSNRAGQ
DVSIADFLVSEGLALKERKPQASPMPKLEELSDSDSKFKGLQNRTPNTENQPPTPSSDWS
VSPRPVSTAPTPPKPAPRTNPSPEKVKTQAYCPPELPHCGRTLMTISAIGEDGLIYAMTH
HAGRQFEQLRERLQQHIKTLPRLKPYTWKSVLGCAVMGSDMLWYRGEVLEVIGGHVKVRY
VDQGLVENIPVCHVYPTVLCEDIPQLCMPCQLHGVIPVGRTWQWDAVALLKELLLNRCVD
MQVMELPEDPLGCLTVQISLDGMTLSRIMVHHQHASVDQTIASTQEELVVSSHLDLDDWD
IDTEGLEDPEPVPRVFSYPTLPEKGERFRVRIKHLRTPNEVFLYPLDGSSCVESGGESLE
EALKRVHDRIDRLAMLSDFAIEAPCLAEYSDGKYYRAKLLGFAGLNPVKILVRHVDFGSD
DTLPTHKLRQIPAHLLRFPCKAIKVRVAGFRPPRHNLEKERLSYRPEWSLKAALEMIDLL
HSCCTASVTATEPELSVFLYDEDGALVYLPLVEKGLADFD
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagatcgcctcgagccgacaacccgaactctgtggtttgtaacatatgcggt
attgcttacactttaccagaggacgaaatcgttggcaaccttcccaatgtcctcctgtgt
tcccacatcttctgcactacctgtctgcgctcgttggagtttaacaatgtcattctgtgc
cctgaatgcaaggttgagtccactcttcctgaaggaggggtggaaggactgcaggtggac
agcagaatcattggcctcatctacacagccaaaatgaacaaaatgaaaagagacagaccg
aggcatcacagagtcaaatcctcgtcttcacctctcgaggaagacacaaaacagggtcca
gatgtagagaaagcactgaaagcaatagaagaggctctgtctcaggcctctgagaacatg
gccaatctggacaacatccatcagactctggtgaaaggcttgatggtgcaggtgaagaga
gagaaggccagactgctgatggagatagatgaggctatgggtagggccttcaccatcctc
aatagaaggaagggggcactggtggctgagctgaccaacatggagcagcacttcccgtcc
agcaggagggaactgggccgggtggaggagaggatgagggccctggacacagccatgcag
aaggccaagcaggtcggacagcacccctccctggagagctactgtgacctggagcagttg
ttggagaccctgcaggcttctgtggatgtacagtcgtttgacctgaagtgtctgtctctg
ggctctggactgagctgcatagcacagcaggatgcgctgggcaggagtctgaaggcgtgt
ctgaagatcaacattgggaacgctaagattctgacagatgagctgatccacagagacaga
gagaggccccaggagcaggctgggcccaataggaaggcccccctgctcccacactccctt
aacaccagagagcccagccgcccccagcagcagcaggagagccaaacgatgatgaggcct
cccccgcccagcaccagagagcatgttccacctcaccaggagcaggaaagcctgaggatg
actaggcatacctggggcccctctcccatccctggccctctgcccttacccagctccagc
cctgtctcagactccggacccaacgtcatcatagaggagattatagaggagattgaacaa
ggaggagaagggaaggacgaagtcagtttgaaatcctgccatcaagtcaccacagcctca
tccaaaaccactgcatcagggttctcagttggagttgtcccagctcacctgtctgagctg
cagcaggccagtgagagacagagagcccagaggagcagcaagaagagccaggaggacctc
ccacctgtcagtcaggggaaagtgttccaggagtgggtgatggtgacccatgtggtgaac
cctaaccacttctacatccgccacgtggcagagcagagggcctgtattctgctgtccaag
aagatcaactccctctgctctggagagagaggactgttcacagccagcgacatactggag
actggctccacagtgtttgtgaagtggaaggaggggatgtggtgtcgggccaccctgaca
gaactgttccagagaggtcacctggacccggtccgcagctgtcctgttcctgaacttcac
cgtgtcagagtctacttccaagactacggtttctgcaagggaatagccctgcagagtgag
gaggcgggtccagacctgttcatcagggacatgaatgagcgtctgagaagagtggacgtg
gccggccaatcagaaatgagccgctggctccctcaggctatcaagtgttccctcaaggac
attgtgcctgcaaacctgactaaaggctggagtgcggaggcccaggatgagtttcgccgc
gtggtgggctcagcctcagtagagatgcaggtgtttggtcaggagagaggtgctctgctg
gtggacctgaagaaagcccccatggacagcggttccagcaacatgcccatgtccctccga
gagtacctagtcttcctcgagctcgccaggttttactctccggtggcgtggaatgccaag
actgtgccatgtggcaggaggcctctccagttctaccttcctgtcttccctcgtaccaac
gtagagctcaacgctgtggtgtcccacatagacacaccctcacacttctacatccaactg
gttgacaacatggagttcctgctgctgacagccaagctgcaggagtgttacagctatgac
tgccccagcagggggaccagaggagaggaccaggacttggaggtctactgtcctgtcctg
gatcaggcctgtgtggcacgctttgacgacaaggtctggtacagggcccatgtcatcggt
attcccgggggcaggaaggtggaagtccagtttgtagactttggcaacaacaagattctg
tcagtcaacgacctgaggaagatcaaggatgagttctttgccctcccagccatggccatc
cagtgctacctggctgatgtgattcctttggaagagggtgagacgtggagcaaagcgtgt
atagagaagttcaagagtcttgctgaccagagacttgtgactgctgtggccacagaggct
ggtcgaaggggcaggggtctgccagtcaggctgtttgagaccagtgattccagcgagccg
ttagcaaacattgaagatctgctggtcaacgaccaactggcctgcttcaagaagggcatc
aaatctaaggacacccaggccccggtggtagacaccacagtgtgggaccccccactcgag
ggtcttctgggtgagtctgagccagcccctacctccctgggacaggagaccccagagcag
gaccaagagatccagccctacctgatgctgccggccaacctgaaagacctgagggtcagg
ttgacccacgtggtctcacccgggagcttttacgtccagcttctacagatggacacccag
ctcaagagggtgtatgagttgttgaagcaggagtatgcccgtacagagccccaggcgata
gagtggaaggcagacatgtactgtgctgcctacaacaacggggtctgggagaggggccag
ctctgctctcctgtttcccttggctgcattgccgaggtagtacgctgtgattttggcaac
aaggtgaaactccatgtgaacaacctgagaccactgctgcccagtctggttggctgtctg
gtgctggagtgttccctcagtgaaatcagacctgcaggcggtcgttccacctggacagcc
acggcgtgtgacttcatctcctactacctgacaggagccatggccatcatgaccatcaag
gagaacacagagcagcgtccggtgctggtctctctgtactgctccaaccgggccgggcaa
gacgttagcatcgcagacttcctggttagtgagggcctcgctctgaaagagaggaagcca
caagcgtcccccatgcctaaactagaggagttatcagactctgactccaagttcaagggc
cttcaaaacaggacacctaacacagaaaaccagccccccaccccctcctctgactggtca
gtctctccccgacccgtctccactgcccctacgccgcccaaaccggccccccgtactaac
ccctccccagagaaggtgaagacacaggcctactgcccccctgagctgccccactgtgga
cgcactctgatgaccatctctgccatcggagaggatggcctcatctacgccatgacgcac
cacgcagggcgtcagtttgagcagctgcgggagcgtctacagcagcacataaagaccctt
cccagactgaagccctacacctggaagagtgtcctgggttgtgctgtaatgggctctgac
atgctctggtacagaggagaggtgctggaggtcattggaggtcatgttaaggtgcgctac
gtggaccagggtctagtggagaacatcccagtgtgtcacgtctaccccacagtgttgtgt
gaggatattccccagctctgtatgccctgccagctgcacggagtcatccctgtgggcagg
acgtggcagtgggatgctgtggctctgctgaaagagctgctgctaaaccgctgtgtggac
atgcaggttatggagctgcctgaggatcctctgggctgtctgacagtacagatttctctg
gatggcatgactctaagcagaatcatggttcaccaccaacacgcctctgtagaccagact
attgcatccacgcaggaggagctggtggtgtcatctcacctagatctagatgactgggac
attgacacagagggtttggaggacccagagccagtaccgagggtgttctcatacccaacc
ctgcctgagaaaggcgaacgcttccgggtcaggatcaaacacctccggacccccaacgag
gtgttcctgtatcccttagatggcagtagttgtgtggagtctggtggggagagtctggag
gaagcactgaagagagtccatgacaggattgaccgtctggccatgctctcggacttcgcc
attgaggccccgtgtctggcagaatacagtgatgggaagtactaccgggccaagctgctg
ggcttcgctggcctcaaccctgttaagatcttggtcagacacgtggactttggctctgac
gacacccttcccacacacaagctgcgtcagatcccggcccatctcctgcggtttccctgt
aaggccatcaaggtgcgggtggcgggcttcagaccaccccgccacaacctagagaaggag
cgcctgtcctaccggccagagtggagcctgaaggctgccctggagatgattgacctgctg
cacagctgctgcaccgcatctgttaccgccactgaaccggagctgtctgtgttcctgtat
gacgaggatggagctctggtctacctgcctctggtggagaaaggactggctgactttgac
taa
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