KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403168
Entry
139403168         CDS       T10872                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03030  DNA replication
ocla03410  Base excision repair
ocla03420  Nucleotide excision repair
ocla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    139403168
   03410 Base excision repair
    139403168
   03420 Nucleotide excision repair
    139403168
   03430 Mismatch repair
    139403168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocla03032]
    139403168
   03036 Chromosome and associated proteins [BR:ocla03036]
    139403168
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139403168
DNA replication proteins [BR:ocla03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    139403168
  DNA Replication Termination Factors
   ELG1-RFC complex
    139403168
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    139403168
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     139403168
  Check point factors
   HRAD17(Rad24)-RFC complex
    139403168
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_lid_RFC1 AAA AAA_22 AAA_11 AAA_16 nSTAND6 Sigma54_activ_2 AAA_5 ABC_tran zf-HC2
Other DBs
NCBI-GeneID: 139403168
NCBI-ProteinID: XP_071002973
LinkDB
Position
Unknown
AA seq 356 aa
MSLWVDKYRPTSLGKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY
GAGVEKLHIEHQTVTAPSKKKIEINTIASNYHLEVNPSDAGNSDRVVIQELIKTMAQSQQ
IQTSTQREFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRCL
AVRVPLPSTEEVCNVLSTVCRKEGLLLPAELAKQISEKSGRNLRKALLMCEACRVQQYPF
SADQDIPETDWEVYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLVTELL
GNCDGQLKAEVTHMAAHYEHRLQQGNKAIYHLEAFTARFMAIYKKFMEDGLDAMMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttgtgggtggacaaatacagaccgacttctctggggaaactggactaccacaaa
gaacaagcaaatcagctgaaaaacctggtccagtgtggggacttccctcatctgttggtg
tacgggccgtctggagcagggaagaagactcgtatcatgtgtctgctgagagaactgtac
ggagccggagtggagaaactacacatagaacaccagaccgttacggctccctctaagaag
aagattgagatcaacaccatagccagtaactaccacctggaggtcaacccaagtgatgct
ggtaacagtgaccgtgtggttatccaggaactgatcaagactatggcccagtctcaacag
atccagaccagcacccagagggagttcaaagttgtcctgttgacagaggtggaccgcctc
actaaggatgcccagcatgcattgcgtcgtaccatggagaagtacatgtccacctgccgg
ctcatcctctgctgtaactccacctccaaagtcattggaccaatcaggagcaggtgtctg
gccgtcagggtgcccctgcccagtacagaggaggtgtgtaatgttctgtctacagtgtgt
aggaaggagggtctgcttctccccgctgagttggccaaacagatatcagagaagtctgga
cgcaacctccgcaaagcactgctgatgtgtgaggcctgcagagtgcaacagtacccgttc
tcagcagaccaggacatcccagagaccgactgggaggtttacctgagagagacggccaac
gccatcgtcagtcagcagagtcctcagaggttgttagaggtgagggggagactgtatgag
ttgctgactcactgcattcctcctgagatcatcatgaagggcctggtaacagagctgcta
ggtaactgtgacggccagctgaaggcagaggtgactcacatggcagcccactacgaacac
cgactgcagcagggcaataaggccatctaccacctagaggctttcaccgccaggttcatg
gccatctacaagaagttcatggaggacggactggacgccatgatgttctga

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