KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403876
Entry
139403876         CDS       T10872                                 
Name
(RefSeq) dmX-like protein 2
  KO
K24155  rabconnectin-3a
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    139403876
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocla04131]
    139403876
Membrane trafficking [BR:ocla04131]
 Exocytosis
  Small GTPases and associated proteins
   Rab associated proteins
    139403876
 Endosome - Lysosome transport
  Acidification regulators
   Rabconnectin-3 complex
    139403876
   RAVE complex
    139403876
SSDB
Motif
Pfam: Rav1p_C WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st WD40 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st WD40_WDHD1_1st WDR55 Beta-prop_IFT140_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_EML DSE1_N Beta-prop_HPS5 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_DCAF12 ASA1 ANAPC4_WD40 Beta-prop_NOL10_N Beta-prop_DCAF4 Beta-prop_LRRK2 Beta-prop_VPS8 Beta-prop_CAF1B_HIR1 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_SPT8 NBCH_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th
Other DBs
NCBI-GeneID: 139403876
NCBI-ProteinID: XP_071003156
LinkDB
Position
Unknown
AA seq 2739 aa
IPAVLAESAVFTPEDGSGGGGFVVHWLNNKDLSFTTSMDLFMLQLRKLSEQQLDQATDDA
LDQNGSPIKFDFDLDEMSEKGSSEHEEGEGGEGSTKASSPGSSSSVPLPSMLLERKMESL
TLEWNKSPDMLFTIHPTDGSFLVWHVKYLDEYIQGIFRQVQVSFSSRIPVAFPTGDANSL
SKNILMYACSFSNVDSSNAGGEQGRTARRLPRSASAGLGSSALSLSLGQAPGIGPAVMMV
SKHVDGSLNQWAVTFAERSAFSNVLTVSHTFRYCGHRFHLNDQACHTVLPLLLTSSHHNA
LLTPPSAPGSIDLDQPPTHTPPPRGRRRKQLRNAATRTFHDPNAIYSELILWRVDHIGPL
SCTGGVSELARINSLHTSAFSNVAWLPTLVPSSVLGTYCNSSSACFVASDGKNLRLYQAV
VDARKLLDELSDPETSKLVGEVFNIVSQQSTARPGCIIELDVITNQCGSTTQLLHVFQED
FILGYTPQEDPELYTTSYPSLEEYHPTPFSEKFFLVVIEKDLNMNSVLQMWHLHLQSVQA
CVDDPVPELSYQSQLTIPFQQSTADTSPSPLPRSASTANLQSASKLILSSKLVCSHRLDL
PVGVEVTRATPSAGHLSSSSIYPVCLAPYLIVTTCSDSRVRFWRCSVEGGETALGCEEGE
NRIYHWEPWALLNEEEDNNSAVCVPGRPVAVSCSYTGRLAVSFKQPRPGHIPGQGHGPAG
DFSMHVSIFECESTGGSEWVLEQTLHLDDFTRPSSTLDPGVSVDSNLFVYSRSDLYMSRD
HHSPNIKHYVHLDWLSKEDGSHILTVGVGSNILMYGRISGVVNEQTSSKDGVAIITLPLG
GSIKQGIRSRWILLRTVDLLSSVDGTPSLPVSLSWVRDGILVVGMDCEMHVYAQWRQDRK
PGEAEGDSLSSEDNIAGGVGGGGGQMATNATTGGSSLAFKGRPRSKSVFEGNVAIDEALQ
APAGLQEGGLFEAAHSLSPTLPQYHPTQLLELMDLGKVRRAKAILSHLVKCIAGEVAVVR
DVEAGEGGTRRHLSRTISVSGSTAKDTIVAGRDGGRDYTEINSIPPLPLYALLSADLDTS
YKGGEEGAKGGKVSEVEGARKTGDQYTDLFQLQAVTTDDFVSFATEKVEKKSRFINLSQY
GPTYFGPEHAQVLSSQLMHSSLPGLTRLEQMFLVALADTVATTSSEVSSSTDKQYTGGEA
LDECGLRYLLAMRLHTCLLTSLPPLYRMQLLHQGLSTCHFAWAFHSEAEEEMLNMIPAMQ
RGDPQWSELRAVGVGWWIRNINTLRRMVEKVGKAAFQRNNDPLDAALFYLAMKKKAVLWG
LFRSQRDEKMTVFFKNNFSEDRWRKAALKNAFSLLGKQRFEQAAAFFLLAGSLKDAIEVC
LEKMEDIQLAMVVARLYEADYESSSTCQAILYEKVLGCQRDGSGYHCTKLHPDPFLRSIA
FWIMKDYTKALDTLLECIPKEDDENPDVMVKSCNPVVFSFYNYLRTHPLIIRRHYASPEG
AVTSSLGLTSEKSSVDEINLIERKLFFTTANAHFKVGCPVLALEVLSKIPKVTKKTVSSS
PLSKGSSMANVSSSLPLENGNQGALDWASPAPVKANPAWGTEESSATLDWSQPLVKVEDD
GLQLDWGDDKNDEDDTDGGLTMKKTDEATKADEGSGGVRPPGLQREDSQGESEVDVIAEQ
LKFRACLKILMTELRTLATGYEVDGGKLRFQLYSWLEKEIGAMHRICNYKVTGKEESQEL
ERWEDGGGVEDVFEESLGGGGGTEAGAYERHQLGRRRLAAKQLHAERRKAWLRKNQALLR
VFLSYCSLHGAKGGGVTSVRMELIFLLQESQQETTVKQLQSPLPLPTTLPLLSASIATTK
TVISNPVLHLSNHIHDILHTITQMELPPHPDLMDDRVNLLHTLAASLSACIYQALCDSHS
YSSQAEANQFTGMVYQGLLLSERRRLRTESIEEHATPTSAPAQWPGVSSLIALVQSAQGE
DQPKLNVLLCEAVVAVYLSLLIHGLGMHAGNELFRLAAHPLSNKMWAAVFGGGAKIIIKP
KRNAEITPAAAAGKARTDSSSSVTSEPDSGTKAKPAVPAPPPAEDVDRLRRRFNMRMLVP
GRPVKEVPATPPPVPAERPAYREKFIPPELSMWDYFVAKPFLPLSDSGALYDSDESGEED
DDDDDDDAFLSDTQMTEHSDPNSYSWSLIRLVMVKLALHNVKTFLPLTGLDFTDLPVTSP
LGNAVLKTLENWETQLQERMNKFDGPPPNYINTYPTDLSTGGGPAILRHKAMLEPDNTPF
KNKNHISFPARRLWHYLVKQEVLQETLIRYIFTKKRKQSECVEGYMDLLSPNCVSGALRS
NKVEGDLGYPGRNAKIIHKESDIIMAFAINRANTNEIVLASTHDVQEVDVSTLLAAQPYT
WIGEDFDKESHSSDDVDYRSSHTNVAQASSTPSHFNPKDMAASASMPWLGSGQTSMGASV
IMKRNLNNVKRMTSHPIFQYYMTGAQDGSVRMFEWNRPQQLICFRQAGNARVTRLYFNSQ
GNKCGVSDGEGFLSLWQVNQTSSNPKPYVSWQCHSKTCGDFAFITSSSLIATAGQSNDSR
NVCLWDTLISPSNAMVHAFPCHENGATVLQYAPKQQLLISGGRKGFVCVFDIRQRQLLHT
FQAHDSAVKALALDTSEDFFVTGSAEGNMKVWKLAGHGLMHSFSTEHAKQSIFRNIGAGV
MQVETRPGNRIFTCGADGTLKMRVLPDRYNIPSSIFDIL
NT seq 8222 nt   +upstreamnt  +downstreamnt
acatcccagcggtgctagcggagtctgccgtgtttactccggaggacgggagtggaggag
gagggtttgtggtccactggctcaacaacaaggacctgtccttcaccacctccatggacc
tgttcatgctgcagctccgcaagctctcagaacagcagctggaccaagccactgacgacg
ccctcgaccagaacggctcccccattaagtttgactttgacctagatgagatgtcagaga
agggttcatcagagcatgaggagggtgagggtggtgagggcagcaccaaggcgtcatccc
caggctccagtagctcagtgcccctgccctccatgttgctggagaggaagatggagtcgt
taactctggagtggaataagagtcctgacatgctgtttaccatccaccccaccgacgggt
ccttcctggtctggcacgtcaaatacctggacgagtacatccaggggatcttcagacagg
tgcaggtgtcgttctcgtcccgtatcccggtggcgttccctacaggcgacgccaactccc
tgagtaagaacattcttatgtacgcctgctccttctccaacgtggatagctccaacgccg
ggggagagcaggggaggacggcccgccgtctgccccgttctgcctctgctgggctgggtt
cctcagccctcagcctctctctgggccaagctccaggcatcggccctgctgtcatgatgg
tgtccaaacatgtggacgggtctctcaatcagtgggcggtgacgttcgctgagcgctcgg
cgttctccaacgttctaactgtgtctcatacgttccgttactgcggtcaccggttccacc
tcaacgaccaggcgtgtcacaccgtcctccccctactgctgacctcttcccaccacaacg
ctctcctcacccccccctccgcccccggcagcatcgacctcgaccagccacccacacaca
cacctccccccagaggacggcgcaggaagcagctgcgtaacgcggccaccaggacattcc
atgacccgaacgccatctacagtgagctgattctgtggagggtggaccacataggacccc
tgtcctgcactggaggagtgtcagagctggcccgaatcaactccctgcacacatcagcct
tctccaatgtagcatggctgcctacccttgtacccagctctgtgctaggtacatactgta
acagttccagtgcgtgcttcgtagcgtcagatggtaagaacttgcgtctctaccaggctg
tggtggacgccaggaaactactggacgaactgtcagaccctgagacctcaaaactagtag
gagaggtatttaacatagtgagccagcagtcgacagccagaccaggatgcatcatagaac
tagatgtcatcactaaccagtgtggatctaccacccagctccttcatgttttccaggagg
actttattttggggtatacacctcaggaggacccagagctctacactacatcctaccctt
ctctcgaggagtaccaccctactccgttctctgagaagttcttcctggttgtcatagaga
aggacctgaacatgaactctgtgctgcagatgtggcacctgcacctccagtccgtacagg
cttgtgtggatgatccggtcccagagctgtcttaccagtctcagctgacgatcccgttcc
aacagagtacagctgacacgtccccctcccctctccctcgctcagcctccacagccaacc
tgcagtcagccagcaaactgatcctcagctccaagctggtctgtagccaccgcctggacc
tgcctgttggggtggaggtgaccagggctacgccctccgcaggtcacctgagttcgtcgt
ccatctaccctgtgtgtctggccccctacctgatcgtcaccacctgctctgactcccgcg
tccgtttctggcgctgctctgtggagggtggagagacagccctggggtgtgaggaggggg
agaacaggatctatcactgggagccttgggctctactcaacgaggaggaggataacaaca
gcgctgtgtgtgtcccgggacgtcctgtagccgtgtcctgttcctacactggacgactgg
ctgtctccttcaaacagccccggcctggacacatcccgggacagggccatggtccagcag
gggacttctccatgcacgtgtccatctttgagtgtgagtctacgggggggtctgagtggg
tgttggagcagactctccatctggatgacttcactaggccctcctctaccctggaccccg
gagtcagtgtagactccaacctctttgtgtacagcaggtctgacctgtacatgagtcgcg
accaccactctcccaacatcaaacactatgtccacctggactggctgtccaaagaggacg
ggtctcatatcctcacggtgggggtgggatctaatatcctcatgtacggtcgcatctcgg
gcgttgtcaacgaacagacctcaagcaaggacggggtggcgatcatcaccctacctctag
ggggcagcatcaaacagggtatccgttcacgctggatcctgctgcgcactgtggacctgc
tctcctctgtagacggcaccccctccctgcccgtgtccctgtcctgggtgagggacggca
tcctggtggttggtatggactgtgagatgcacgtgtacgcccagtggcgccaggaccgca
agcccggcgaggccgagggggacagcctctcctctgaagataacatcgccgggggggttg
gagggggcggagggcagatggccaccaatgcaaccacggggggatcctcgttggcgttca
aggggcgcccccggtccaagagtgtgtttgagggcaacgtggcaatcgacgaggctctcc
aggcgccggcagggctgcaggaggggggtctgttcgaggcagcccactccctgtccccca
ccctgcctcagtaccatccaacacagctgctggagctcatggacctggggaaggtccgcc
gtgccaaggccatcctgtcccacctggtgaaatgtatcgctggggaggttgctgtggtga
gggacgtggaggcaggtgagggtggaaccagacgccacctgtcccggacaatcagtgtga
gcggcagtacggctaaagacaccatcgtggccggccgcgacgggggacgagattacacag
aaatcaactccataccccctctacccctctacgctctgctctctgctgacctggacacct
cctataagggaggagaggagggggcgaagggaggcaaggtgtccgaggtagagggggcga
ggaagacaggagatcagtacacagacctgttccagttgcaggcggtgacgacggatgact
ttgtgagcttcgctacagagaaagtagagaagaagtctagattcatcaacctgtctcagt
acggacccacctacttcggaccagaacacgcacaggtgttatctagtcagctgatgcatt
ccagtcttccaggtctgaccaggttggaacagatgtttctggtggcgctagctgatactg
tagctaccaccagttcagaggtcagcagctccactgacaaacagtacacaggtggtgagg
ccctggatgagtgtgggttgaggtacctgttagccatgcgtctacacacctgtctcctca
cctctctacccccactgtaccgcatgcagttgctgcaccaaggtctgtctacgtgtcact
ttgcgtgggcgttccactcggaggctgaggaggagatgttgaatatgatcccggccatgc
agagaggagaccctcagtggtctgagctacgggctgtaggggtgggctggtggatacgca
acatcaacacactacgcaggatggtggagaaggtgggtaaggcagcgttccagaggaaca
acgatcctttagatgcagctctcttctacctggccatgaagaagaaggctgttctctggg
gcctgttcaggtctcagcgtgatgagaagatgacggtgttctttaagaataacttcagtg
aggaccgctggcgtaaagcagctctgaagaacgctttctctctgctggggaaacagcgct
ttgaacaggctgctgccttcttcctgctggctggctccctgaaagacgccatcgaggtgt
gcttggagaagatggaagatatccagttggccatggtagtagccaggctgtacgaggctg
actatgagagcagttccacctgccaagccatcctgtatgagaaggttttgggctgccaga
gggacgggtcagggtaccactgcaccaaactacacccggacccattcctacgcagcatag
ccttctggatcatgaaggactacaccaaggccctggacacactgctagagtgcatcccca
aagaggatgatgagaacccagatgtgatggtgaagtcgtgtaacccagtggtatttagtt
tctataactacctgaggacacaccccctgatcatccgccgccactacgcatcccctgagg
gtgctgtgacatcatcactaggcctcacctcggagaagagcagcgtcgacgagatcaacc
tcatcgaacgcaaactcttcttcaccacggccaacgcacacttcaaggtgggctgtccag
tgcttgccctggaggtgctctctaagatccccaaggtgaccaagaagacagtctcctcgt
cccccctaagtaaaggctcttccatggccaacgtcagctctagcctgcccctggagaatg
ggaaccagggggccctggactgggcctctcctgccccagttaaggccaatcctgcctggg
gtacagaggagagctcagccacactggactggagccaacctctggtcaaagtggaggacg
atggactccagctggactggggagatgataagaacgatgaagatgatactgatgggggtc
taacaatgaagaagactgatgaggcgaccaaagctgacgaggggtctgggggggtgagac
cacctgggctgcagagagaggactctcagggtgagtctgaggtggacgtgatcgcagagc
agctgaagttcagagcgtgtctgaagatactgatgacagagctcaggacgttagctacgg
gctatgaggtggacggagggaagctgcgctttcagctctacagctggttagagaaggaga
taggggccatgcaccgcatctgcaactacaaggtgacggggaaggaggagagccaggagc
tggagagatgggaggatggaggaggagtagaggacgtgtttgaggagtccctggggggtg
gcgggggtacggaggcaggggcgtatgagcgccaccagctggggcgtaggcgtctcgcag
ccaagcagcttcatgctgagaggaggaaggcgtggctgaggaagaaccaggctctgctcc
gagtcttcctgtcctactgcagcctgcacggagccaagggagggggggtcacctcggtac
gcatggagctcatcttcctgctgcaagagagccaacaggagactacagtgaaacagcttc
agtcccccctgcccctccccaccaccctccccctcctctcagccagtatcgccaccacca
agacagtgatctccaaccctgtcctccaccttagcaaccacatccatgacatccttcaca
ccatcacacagatggagctgcctccacaccctgacctcatggacgacagggtgaatctcc
tgcacaccctggctgcctctctgtctgcctgcatctatcaagccctgtgtgacagccata
gctacagcagccaggcagaggccaatcagtttacagggatggtgtaccagggcctgctgc
tgagtgagaggagacggttacgcaccgagagcatcgaggagcatgctacacccacctctg
cccccgcgcagtggccaggtgtgtcctctctgattgctctggttcagtcagctcagggcg
aggatcagcccaagctcaacgtgctgctgtgtgaggctgtggtggcagtttacctgtccc
tgctcatccatgggctgggcatgcacgctggcaacgaactgttccgcctcgctgctcacc
ccctcagcaacaagatgtgggcggccgtgtttggaggtggggctaaaatcatcatcaaac
ccaaacggaacgccgagatcactccagcagcagcagcaggtaaagctagaacggactcgt
catcatcagtgacctctgaacctgactcagggactaaggctaaaccagccgtgccagccc
ctcccccggcagaggatgtggatcgactcagacgacggtttaatatgaggatgctggttc
ctggtcgtccagtaaaggaggtccctgccaccccccctcccgtccctgcagagagacccg
cctacagggagaagttcattccgccagagctcagcatgtgggactactttgtggccaaac
ccttcctgcccctgtcagacagtggagctctgtatgactcagatgagagcggagaggagg
atgatgacgacgatgatgatgatgccttcctctctgacacacagatgactgaacactctg
accccaactcatacagttggtctctgatccgtctggtcatggtgaaactggctctacata
acgtcaagaccttcctccctctcactggactggacttcacagacctgccggtgacatctc
ctctggggaatgctgtgctgaagacactagagaactgggagacccaactccaggagagga
tgaacaagtttgatggtcctcctcccaactacatcaacacctaccccactgacctcagca
caggaggggggcccgccatactgagacacaaggccatgctggagcctgacaacacacctt
tcaagaataagaaccacatttcgttccctgcgaggcgtctttggcactacctggtgaaac
aggaagttcttcaggagactctgattcgctatatcttcactaagaagaggaagcagagcg
agtgtgttgaaggctatatggatctcctcagcccaaactgtgtatctggagctctcaggt
ccaacaaggtggagggagacttaggctacccaggaaggaatgctaagatcatccacaagg
agtctgacatcatcatggccttcgccatcaacagggctaacaccaatgagatagtgctgg
cgtccactcacgacgtgcaggaggttgatgtgtccactctgttagctgctcagccctaca
cctggataggagaggactttgacaaggagtcacacagttctgatgacgtggactaccgtt
cttcccacactaacgttgcccaggcctcctctaccccgtcccacttcaaccccaaagaca
tggcagcctctgcatccatgccctggctagggagtgggcagaccagcatgggtgctagtg
tgattatgaagaggaacctgaacaatgtgaagagaatgacctcccaccccatattccagt
actatatgactggggctcaggacggcagtgtccgtatgtttgagtggaacaggccacagc
aactcatctgcttcagacaggcaggcaatgccagagtcacacgcctctacttcaactcac
agggaaacaagtgtggtgtatcagatggagaaggcttcctcagtctgtggcaggtcaacc
agacctcctccaaccccaagccctacgtgagttggcagtgccactctaagacctgtggtg
attttgccttcatcacttcctccagtctcatcgcaacggcaggacagtccaacgacagca
gaaatgtctgcctgtgggacactcttatttcacctagtaacgccatggtacatgccttcc
cgtgccatgagaacggtgcaacggtgttgcagtacgctcccaagcagcagctgctgatct
caggaggcaggaagggctttgtgtgtgtgtttgacatccgacagagacagctgctacaca
ccttccaggcccacgactcagccgtcaaagccctggcgctcgacacctccgaagacttct
tcgtaaccggctcggctgaggggaacatgaaggtgtggaagctggcaggccatggcctca
tgcactcgtttagcacagagcatgccaagcagtccatcttccggaacatcggagcaggcg
tcatgcaggtggagacccgccccggcaaccgtatattcacctgcggcgccgacggaaccc
tcaagatgagggttctacccgaccgctacaacatcccctctagcatcttcgacattctgt
ag

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