Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139403883
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Entry
139403883 CDS
T10872
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139403883
04517 IgSF CAM signaling
139403883
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139403883
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
NGL family
139403883
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
LRR_1
Ig_3
LRR_14
LRR_9
ig
V-set
Ig_2
Ig_6
LRRNT
Phycodna_minor_capsid
Syndecan
Motif
Other DBs
NCBI-GeneID:
139403883
NCBI-ProteinID:
XP_071003172
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MLITMISSLQRQTMRDPRLRGARSYPLFVLLLALQILAVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFQDLSNLRYLNLGMCNLKEIPNILPLVRLEELEMSGNQISVIGPGSF
AGLANLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHRLERVHLH
HNPWNCNCDILWLSWWLKETVPANTSCCARCHTPANYRGRYIGELEHSYFQCDVPVIVEP
PADRNVTEGMAAELKCRTSSLTSVSWLTPNGSLVTHGAYKVRLAVLNDGTLNFTTVTMQD
TGTYTCMVSNTAGNISASAVLNVTSVENSGVTYFTTVTVETTETVDDSQTPALPPIGWVS
SSTTRGPPVQTRTTERTYTVSVLDLDGEGDRGLEEVMKTTKIIIGCFVAITLMAAVLLVI
FYKMRKQNHQQDPDGPASSMEVITVEEELAGVAAMETHLHLPPLEHYNHYNTYRSTYHHS
HTQEPLLIQASSKDNVQETQI
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcacaatgatctcctccctccagcgccagacaatgagagatcctaggctgagg
ggggctcggtcctatcccctcttcgtgctactgttggccctccagatcctggcggtggcc
ggcctggtgcgtgcccagacctgcccctctgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccgccggagcctgcgcgatgtccccgacggcatctcaaccaacacacgt
tacctgaacctgcaggacaacctcatccaggtgatcaaggtggacagcttcaagcatcta
cggcacctggaaatcctgcagctgagcaagaaccacatccgcaacatcgagatcggcgcc
ttcaacggcctggccagtctcaacaccctggagctgttcgacaaccgtctcaccaccatc
cccaatggggccttcgagtacctctccaagctcaaggagctgtggctgaggaacaacccc
attgagagcatcccgtcgtacgccttcaaccgggtcccctcgctgcgaagactggacctt
ggagagctcaagcggctctcctacatctcagatggagccttccaagacctcagcaacctg
cgctacctgaacctgggcatgtgcaacctcaaggagatccccaacatcctacccttggtc
aggctggaggagctagagatgtcagggaaccagatctctgtcatagggcctggctctttc
gcagggctggcgaacttgcagaagttgtggatgatgcatgctcagatccagaccatcgag
aggaactcctttgacgacctccagtccctggtggagctcaacctggcccacaacaacctc
accctgctgccccatgacctcttcacccccctgcaccgcctggagagagtccatctgcac
cataacccctggaactgtaactgtgacatcctgtggcttagctggtggctgaaggagaca
gtgcctgccaacaccagctgctgtgcccgctgccacaccccagcaaactacaggggtcgc
tacatcggcgagctagagcacagctacttccagtgcgatgtgcctgtcatcgtggagccg
ccggcggaccgcaacgtcacagagggcatggcggctgagctcaagtgcagaacgagctcg
ttgacctcggtcagctggctcacccccaacgggtctctggtgacccacggggcgtacaag
gtgcgcctggccgtcctcaacgacgggacgttgaacttcaccaccgtcaccatgcaggac
acggggacttacacctgcatggtgagcaacacggcgggcaacatctctgcctctgccgtg
ctcaacgtcacctcggtggagaacagcggcgtcacctacttcaccacagtcaccgtggag
accacagagacagtcgacgacagccagactcctgctcttccaccgattggctgggtatca
tcttcgaccaccagggggcctccagtccagaccaggaccacagagcggacctacaccgtc
tctgttctggacctggacggggagggggaccgcggcttggaggaggtgatgaagaccacc
aagatcatcatcggctgctttgtggccatcacgctcatggccgccgtcttgctggtcatt
ttctacaagatgaggaagcagaaccaccagcaggaccccgatggccccgcctcctccatg
gaggtcatcacagtggaggaggagctcgccggtgtcgctgccatggagacccacttacac
ctgcccccattggagcattacaaccattacaacacttacaggagcacctaccaccactcc
cacacacaggaacctttactgattcaagccagctcaaaagacaatgtgcaagagacccaa
atttga
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